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AT3G47580.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.809
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47090.1); Has 205192 Blast hits to 128567 proteins in 4736 species: Archae - 173; Bacteria - 19530; Metazoa - 65101; Fungi - 9747; Plants - 86373; Viruses - 300; Other Eukaryotes - 23968 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G47580-MONOMEReggNOG:COG0515eggNOG:COG4886eggNOG:ENOG410IH5R
EMBL:AL132955EMBL:AY059729EMBL:BT001976EMBL:CP002686
EMBL:FJ708736EnsemblPlants:AT3G47580EnsemblPlants:AT3G47580.1entrez:823912
Gene3D:2.60.120.200Gene3D:3.80.10.10GeneID:823912GO:GO:0004674
GO:GO:0005524GO:GO:0016021Gramene:AT3G47580.1hmmpanther:PTHR27000
hmmpanther:PTHR27000:SF39HOGENOM:HOG000116551InterPro:IPR000719InterPro:IPR001611
InterPro:IPR003591InterPro:IPR008271InterPro:IPR011009InterPro:IPR013210
InterPro:IPR013320InterPro:IPR017441InterPro:IPR032675KEGG:ath:AT3G47580
OMA:FINPLERPfam:PF00069Pfam:PF00560Pfam:PF08263
Pfscan:PS50011PhylomeDB:Q9SN80PIR:T45718PROSITE:PS00107
PROSITE:PS00108PROSITE:PS50011Proteomes:UP000006548RefSeq:NP_190342.1
scanprosite:PS00107scanprosite:PS00108SMART:SM00220SMART:SM00369
SMR:Q9SN80STRING:3702.AT3G47580.1SUPFAM:SSF52047SUPFAM:SSF52058
SUPFAM:SSF56112TAIR:AT3G47580TMHMM:TMhelixUniGene:At.72450
UniProt:Q9SN80
Coordinates (TAIR10) chr3:+:17532687..17535810
Molecular Weight (calculated) 111260.00 Da
IEP (calculated) 8.24
GRAVY (calculated) 0.01
Length 1011 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKLFLLLSFS AHLLLGADGF TDETDRQALL EFKSQVSEGK RDVLSSWNNS FPLCNWKWVT CGRKHKRVTH LNLGGLQLGG IVSPSIGNVS FLISLDLSDN
0101: AFGGIIPREV GNLFRLEHLY MAFNSLEGGI PATLSNCSRL LNLDLYSNPL RQGVPSELGS LTKLVILDLG RNNLKGKLPR SLGNLTSLKS LGFTDNNIEG
0201: EVPDELARLS QMVGLGLSMN KFFGVFPPAI YNLSALEDLF LFGSGFSGSL KPDFGNLLPN IRELNLGEND LVGAIPTTLS NISTLQKFGI NKNMMTGGIY
0301: PNFGKVPSLQ YLDLSENPLG SYTFGDLEFI DSLTNCTHLQ LLSVGYTRLG GALPTSIANM STELISLNLI GNHFFGSIPQ DIGNLIGLQR LQLGKNMLTG
0401: PLPTSLGKLL RLGLLSLYSN RMSGEIPSFI GNLTQLEILY LSNNSFEGIV PPSLGKCSHM LDLRIGYNKL NGTIPKEIMQ IPTLVNLSME GNSLSGSLPN
0501: DIGSLQNLVK LSLENNKFSG HLPQTLGNCL AMEQLFLQGN SFDGAIPNIR GLMGVRRVDL SNNDLSGSIP EYFANFSKLE YLNLSINNFT GKVPSKGNFQ
0601: NSTIVFVFGN KNLCGGIKDL KLKPCLAQEP PVETKHSSHL KKVAILVSIG IALLLLLVIA SMVLCWFRKR RKNQQTNNLV PSKLEIFHEK ISYGDLRNAT
0701: NGFSSSNMVG SGSFGTVFKA LLPTESKIVA VKVLNMQRRG AMKSFMAECE SLKDTRHRNL VKLLTACAST DFQGNEFRAL IYEYLPNGSV DMWLHPEEVE
0801: EIRRPPRTLT LLERLNIVID VASVLDYLHV HCHEPIAHCD LKPSNVLLED DLTAHVSDFG LARLLLKFDK ESFLNQLSSA GVRGTIGYAA PEYGMGGQPS
0901: IHGDVYSFGV LLLEMFTGKR PTDELFGGNL TLHSYTKLAL PEKVFEIADK AILHIGLRVG FRTAECLTLV LEVGLRCCEE YPTNRLATSE VAKELISIRE
1001: RFFKTRRTPR R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)