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AT1G29390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cold regulated 314 thylakoid membrane 2
Curator
Summary (TAIR10)
Integral membrane protein in the inner envelope of chloroplasts. Provide freezing tolerance.
Computational
Description (TAIR10)
cold regulated 314 thylakoid membrane 2 (COR314-TM2); CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: COLD REGULATED 314 INNER MEMBRANE 1 (TAIR:AT1G29395.1); Has 147 Blast hits to 144 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:25049eggNOG:ENOG410IX87eggNOG:ENOG4111T1XEMBL:AC068667
EMBL:AY080813EMBL:AY123008EMBL:CP002684EnsemblPlants:AT1G29390
EnsemblPlants:AT1G29390.1entrez:839814GeneID:839814Genevisible:F4I1G5
GO:GO:0009535GO:GO:0009631GO:GO:0009941GO:GO:0031357
GO:GO:0070417hmmpanther:PTHR33596hmmpanther:PTHR33596:SF3HOGENOM:HOG000082566
InParanoid:F4I1G5IntAct:F4I1G5InterPro:IPR008892iPTMnet:F4I1G5
KEGG:ath:AT1G29390OMA:NLQWVCTPaxDb:F4I1G5Pfam:F4I1G5
Pfam:PF05562PRIDE:F4I1G5PRO:PR:F4I1G5ProteinModelPortal:F4I1G5
Proteomes:UP000006548RefSeq:NP_564327.1RefSeq:NP_973936.1STRING:3702.AT1G29390.1
TAIR:AT1G29390tair10-symbols:COR314-TM2tair10-symbols:COR413IM2TMHMM:TMhelix
UniGene:At.40751UniProt:F4I1G5
Coordinates (TAIR10) chr1:-:10286409..10287878
Molecular Weight (calculated) 24799.00 Da
IEP (calculated) 11.17
GRAVY (calculated) 0.61
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLCLSSSR IVSLHHQKPF LALKLRPRPS NISGLGHSTS VVCFNPLRLS ADRQRTATVS ARAEKRRKRG SSVVCYATPM LSVHNLQWIS TISCVALMFA
101: RGTGIHKSFV VPLFALQAPM GIVSWMKGEY GIWAAFLALL TRLFFSFPVE LELPFIALLL VIVAPYQVMS IRGKQEGAIL SLAISCFLAF QHFSRAGTLQ
201: KAFDQNSVLA TVAIIGVTVV SFLFLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)