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AT1G14260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.835
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G02960.3); Has 1793 Blast hits to 1789 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 745; Fungi - 130; Plants - 638; Viruses - 54; Other Eukaryotes - 226 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5183eggNOG:KOG1609EMBL:BT024486EMBL:CP002684
EMBL:DQ059090EnsemblPlants:AT1G14260EnsemblPlants:AT1G14260.1EnsemblPlants:AT1G14260.2
entrez:837987Gene3D:3.30.40.10GeneID:837987GO:GO:0004842
GO:GO:0008270GO:GO:0016021GO:GO:0016567Gramene:AT1G14260.1
Gramene:AT1G14260.2InterPro:IPR011016InterPro:IPR013083InterPro:IPR022143
KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT1G14260
ncoils:CoilOMA:CHQPYQAPfam:PF12428Pfam:PF12906
Pfscan:PS51292PhylomeDB:Q4PS45PROSITE:PS51292Proteomes:UP000006548
RefSeq:NP_172878.1RefSeq:NP_849660.1SMART:SM00744SMR:Q4PS45
STRING:3702.AT1G14260.1SUPFAM:SSF57850TAIR:AT1G14260TMHMM:TMhelix
UniGene:At.41979UniGene:At.41980unipathway:UPA00143UniProt:Q4PS45
Coordinates (TAIR10) chr1:+:4873200..4874430
Molecular Weight (calculated) 29541.70 Da
IEP (calculated) 4.35
GRAVY (calculated) -0.30
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNHHTVVYV NGLVRPVLAE AEYSMRTESP ADNAIDIYDG DTTENEEEDS LISSAECRIC QDECDIKNLE SPCACNGSLK YAHRKCVQRW CNEKGNTICE
101: ICHQPYQAGY TSPPPPPQSE ETTIDIGGGW RISGLDLDDP RLLAIAEAER QILESEYDDY TASDTSGAAF FRSAALILMT LLLLRHALTI PDYSDSEDDD
201: PSSILSLFLL RAASFLLPCY IMASAISILH RRRQRQEAAD LATRFALVLS SRQPRPVINY LSMEP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)