AT4G23030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.967 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MATE efflux family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: stem, male gametophyte, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G52050.1); Has 11257 Blast hits to 11210 proteins in 2068 species: Archae - 244; Bacteria - 8067; Metazoa - 149; Fungi - 328; Plants - 1302; Viruses - 0; Other Eukaryotes - 1167 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12072857..12074365 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55235.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.24 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.64 | ||||||||||||||||||||||||||||||||||||||||
| Length | 502 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAPLLMIIK NQTDHRQDPN PNPTHLSSSI QEAKSIAKIS LPLILTGLLL YSRSMISMLF LGRLNDLSAL SGGSLALGFA NITGYSLLSG LSIGMEPICV 101: QAFGAKRFKL LGLALQRTTL LLLLCSLPIS ILWLNIKKIL LFFGQDEEIS NQAEIFILFS LPDLILQSFL HPIRIYLRSQ SITLPLTYSA FFAVLLHIPI 201: NYLLVSSLGL GLKGVALGAI WTNVNLLGFL IIYIVFSGVY QKTWGGFSMD CFKGWRSLMK LAIPSCVSVC LEWWWYEIMI LLCGLLLNPQ ATVASMGILI 301: QTTALIYIFP SSLSISVSTR VGNELGANQP DKARIAARTG LSLSLGLGLL AMFFALMVRN CWARLFTDEE EIVKLTSMVL PIIGLCELGN CPQTTLCGVL 401: RGSARPKLGA NINLCCFYFV GMPVAVWLSF FSGFDFKGLW LGLFAAQGSC LISMLVVLAR TDWEVEVHRA KELMTRSCDG DEDDGNTPFL LDSLDIEENL 501: VF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)