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AT5G55470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.534
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Na+/H+ (sodium hydrogen) exchanger 3
Curator
Summary (TAIR10)
member of Sodium proton exchanger family
Computational
Description (TAIR10)
Na+/H+ (sodium hydrogen) exchanger 3 (NHX3); CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407); BEST Arabidopsis thaliana protein match is: sodium hydrogen exchanger 2 (TAIR:AT3G05030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20884eggNOG:COG0025eggNOG:KOG1965EMBL:AB015479
EMBL:AF490588EMBL:AK221571EMBL:CP002688EnsemblPlants:AT5G55470
EnsemblPlants:AT5G55470.1entrez:835640GeneID:835640Genevisible:Q8S397
GO:GO:0005774GO:GO:0005886GO:GO:0006885GO:GO:0009651
GO:GO:0015081GO:GO:0015385GO:GO:0016021GO:GO:0035725
GO:GO:0055075Gramene:AT5G55470.1hmmpanther:PTHR10110hmmpanther:PTHR10110:SF101
HOGENOM:HOG000272718InParanoid:Q8S397InterPro:IPR004709InterPro:IPR006153
InterPro:IPR018422InterPro:IPR029872KEGG:ath:AT5G55470OMA:FKQFTYS
PANTHER:PTHR10110PANTHER:PTHR10110:SF101PaxDb:Q8S397Pfam:PF00999
Pfam:Q8S397PhylomeDB:Q8S397PRIDE:Q8S397PRINTS:PR01084
PRO:PR:Q8S397ProteinModelPortal:Q8S397Proteomes:UP000006548RefSeq:NP_200358.1
STRING:3702.AT5G55470.1TAIR:AT5G55470tair10-symbols:ATNHX3tair10-symbols:NHX3
TIGRfam:TIGR00840TIGRFAMs:TIGR00840TMHMM:TMhelixUniGene:At.29439
UniGene:At.29440UniProt:Q8S397
Coordinates (TAIR10) chr5:-:22469553..22472585
Molecular Weight (calculated) 58875.10 Da
IEP (calculated) 8.21
GRAVY (calculated) 0.48
Length 529 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIGLTEFVT NKLAAEHPQV IPISVFIAIL CLCLVIGHLL EENRWVNESI TAILVGAASG TVILLISKGK SSHILVFDEE LFFIYLLPPI IFNAGFQVKK
101: KKFFHNFLTI MSFGVIGVFI STVIISFGTW WLFPKLGFKG LSARDYLAIG TIFSSTDTVC TLQILHQDET PLLYSLVFGE GVVNDATSVV LFNAVQKIQF
201: ESLTGWTALQ VFGNFLYLFS TSTLLGIGVG LITSFVLKTL YFGRHSTTRE LAIMVLMAYL SYMLAELFSL SGILTVFFCG VLMSHYASYN VTESSRITSR
301: HVFAMLSFIA ETFIFLYVGT DALDFTKWKT SSLSFGGTLG VSGVITALVL LGRAAFVFPL SVLTNFMNRH TERNESITFK HQVIIWWAGL MRGAVSIALA
401: FKQFTYSGVT LDPVNAAMVT NTTIVVLFTT LVFGFLTKPL VNYLLPQDAS HNTGNRGKRT EPGSPKEDAT LPLLSFDESA STNFNRAKDS ISLLMEQPVY
501: TIHRYWRKFD DTYMRPIFGG PRRENQPEC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)