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AT5G55460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26057253 (2015): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT5G55410.2); Has 123 Blast hits to 123 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2CTeggNOG:ENOG410ZFBKEMBL:AK118978EMBL:BT028922
EMBL:CP002688EnsemblPlants:AT5G55460EnsemblPlants:AT5G55460.1entrez:835639
GeneID:835639Gramene:AT5G55460.1hmmpanther:PTHR33122hmmpanther:PTHR33122:SF4
InterPro:IPR016140KEGG:ath:AT5G55460OMA:TIPPACQPfam:PF14368
PhylomeDB:Q8GWA4Proteomes:UP000006548RefSeq:NP_200357.2SMR:Q8GWA4
STRING:3702.AT5G55460.1SUPFAM:SSF47699TAIR:AT5G55460UniGene:At.29439
UniGene:At.29440UniProt:Q8GWA4
Coordinates (TAIR10) chr5:+:22468698..22469133
Molecular Weight (calculated) 11691.60 Da
IEP (calculated) 8.41
GRAVY (calculated) 0.33
Length 109 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTNNTRTVK FAALAIVLAA LVLMEEPTSI TACNINANHL EKCRPAVIGD NPPSPIKECC ELLQAANLKC ICRFKSVLPV LAVYPSKVQA LLSKCGLTTI
101: PPACQALRN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)