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AT3G16990.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Haem oxygenase-like, multi-helical
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Haem oxygenase-like, multi-helical; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084), TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C (InterPro:IPR004305); Has 259 Blast hits to 259 proteins in 88 species: Archae - 23; Bacteria - 94; Metazoa - 0; Fungi - 34; Plants - 38; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Protein Annotations
EC:3.5.1.-EC:3.5.99.2eggNOG:COG0819eggNOG:ENOG410IGGD
EMBL:AB026636EMBL:AF361592EMBL:AY058225EMBL:AY087098
EMBL:CP002686EnsemblPlants:AT3G16990EnsemblPlants:AT3G16990.1entrez:820955
EvolutionaryTrace:Q9ASY9Gene3D:1.20.910.10GeneID:820955Genevisible:Q9ASY9
GO:GO:0009228GO:GO:0009229GO:GO:0050334hmmpanther:PTHR20858
hmmpanther:PTHR20858:SF18HOGENOM:HOG000225158InParanoid:Q9ASY9InterPro:IPR004305
InterPro:IPR016084InterPro:IPR026285KEGG:ath:AT3G16990OMA:TCQRWGN
PaxDb:Q9ASY9PDB:2F2GPDB:2Q4XPDBsum:2F2G
PDBsum:2Q4XPfam:PF03070Pfam:Q9ASY9PIRSF:PIRSF003170
PRIDE:Q9ASY9PRO:PR:Q9ASY9ProteinModelPortal:Q9ASY9Proteomes:UP000006548
RefSeq:NP_188324.1SMR:Q9ASY9STRING:3702.AT3G16990.1SUPFAM:SSF48613
TAIR:AT3G16990UniGene:At.26230UniPathway:UPA00060UniProt:Q9ASY9
Coordinates (TAIR10) chr3:-:5795937..5796783
Molecular Weight (calculated) 25071.60 Da
IEP (calculated) 4.63
GRAVY (calculated) -0.20
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKRGVIDTW IDKHRSIYTA ATRHAFVVSI RDGSVDLSSF RTWLGQDYLF VRRFVPFVAS VLIRACKDSG ESSDMEVVLG GIASLNDEIE WFKREGSKWD
101: VDFSTVVPQR ANQEYGRFLE DLMSSEVKYP VIMTAFWAIE AVYQESFAHC LEDGNKTPVE LTGACHRWGN DGFKQYCSSV KNIAERCLEN ASGEVLGEAE
201: DVLVRVLELE VAFWEMSRGG Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)