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AT5G41920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GRAS family transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT3G54220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19448DNASU:834197eggNOG:ENOG410IIRYeggNOG:ENOG4110TCKEMBL:AB017067EMBL:BT029760EMBL:CP002688
EnsemblPlants:AT5G41920EnsemblPlants:AT5G41920.1entrez:834197GeneID:834197Genevisible:Q9FHZ1GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0048366GO:GO:0090610Gramene:AT5G41920.1hmmpanther:PTHR31636hmmpanther:PTHR31636:SF35
HOGENOM:HOG000238577InParanoid:Q9FHZ1IntAct:Q9FHZ1InterPro:IPR005202KEGG:ath:AT5G41920OMA:DEATVVHPaxDb:Q9FHZ1
Pfam:PF03514Pfam:Q9FHZ1Pfscan:PS50985PhylomeDB:Q9FHZ1PRO:PR:Q9FHZ1PROSITE:PS50985ProteinModelPortal:Q9FHZ1
Proteomes:UP000006548RefSeq:NP_199007.1STRING:3702.AT5G41920.1TAIR:AT5G41920UniGene:At.67848UniGene:At.72727UniProt:Q9FHZ1
Coordinates (TAIR10) chr5:+:16779982..16781199
Molecular Weight (calculated) 44895.60 Da
IEP (calculated) 5.86
GRAVY (calculated) -0.13
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)