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AT5G08790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator
Summary (TAIR10)
induced by wounding, belongs to a large family of putative transcriptional activators with NAC domain.
Computational
Description (TAIR10)
ATAF2; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 102 (TAIR:AT5G63790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:16057eggNOG:ENOG410JU4IeggNOG:ENOG411077UEMBL:AK118910EMBL:AK228803EMBL:AL590346EMBL:AY080862
EMBL:AY133762EMBL:CP002688EMBL:X74756EnsemblPlants:AT5G08790EnsemblPlants:AT5G08790.1entrez:830779GeneID:830779
GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0008361GO:GO:0009416GO:GO:0009611
GO:GO:0009620GO:GO:0009744GO:GO:0009751GO:GO:0009753GO:GO:0043424hmmpanther:PTHR31719hmmpanther:PTHR31719:SF17
HOGENOM:HOG000237406InParanoid:Q9C598IntAct:Q9C598InterPro:IPR003441KEGG:ath:AT5G08790OMA:GTMEKYFPaxDb:Q9C598
Pfam:PF02365Pfam:Q9C598Pfscan:PS51005PhylomeDB:Q9C598PIR:S37100PRO:PR:Q9C598PROSITE:PS51005
ProteinModelPortal:Q9C598Proteomes:UP000006548RefSeq:NP_680161.1SMR:Q9C598STRING:3702.AT5G08790.1SUPFAM:SSF101941TAIR:AT5G08790
tair10-symbols:anac081tair10-symbols:ATAF2UniGene:At.27826UniGene:At.71069UniProt:Q9C598
Coordinates (TAIR10) chr5:-:2859113..2860144
Molecular Weight (calculated) 32226.80 Da
IEP (calculated) 5.47
GRAVY (calculated) -0.69
Length 283 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSELNLPAG FRFHPTDEEL VKFYLCRKCA SEQISAPVIA EIDLYKFNPW ELPEMSLYGE KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKPIGKP
101: KTLGIKKALV FYAGKAPKGI KTNWIMHEYR LANVDRSASV NKKNNLRLDD WVLCRIYNKK GTMEKYFPAD EKPRTTTMAE QSSSPFDTSD STYPTLQEDD
201: SSSSGGHGHV VSPDVLEVQS EPKWGELEDA LEAFDTSMFG SSMELLQPDA FVPQFLYQSD YFTSFQDPPE QKPFLNWSFA PQG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)