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AT2G34140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Dof-type zinc finger DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dof-type zinc finger DNA-binding family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT1G29160.1); Has 1074 Blast hits to 1069 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1069; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
BioGrid:3322eggNOG:ENOG410IYTFeggNOG:ENOG4111564EMBL:AC002341
EMBL:AK221308EMBL:BT010496EMBL:CP002685EnsemblPlants:AT2G34140
EnsemblPlants:AT2G34140.1entrez:817975GeneID:817975Genevisible:O22967
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009908GO:GO:0045892GO:GO:0046872GO:GO:1902455
Gramene:AT2G34140.1hmmpanther:PTHR31089HOGENOM:HOG000090574InParanoid:O22967
InterPro:IPR003851KEGG:ath:AT2G34140MINT:MINT-8064283OMA:VEEWQHA
PaxDb:O22967Pfam:O22967Pfam:PF02701Pfscan:PS50884
PhylomeDB:O22967PIR:H84752PRIDE:O22967PRO:PR:O22967
ProDom:PD007478PROSITE:PS01361PROSITE:PS50884Proteomes:UP000006548
RefSeq:NP_180961.1scanprosite:PS01361STRING:3702.AT2G34140.1TAIR:AT2G34140
UniGene:At.43132UniProt:O22967
Coordinates (TAIR10) chr2:-:14414188..14414700
Molecular Weight (calculated) 18927.50 Da
IEP (calculated) 9.60
GRAVY (calculated) -0.62
Length 170 amino acids
Sequence (TAIR10)
(BLAST)
001: MATQDSQGIK LFGKTIAFNT RTIKNEEETH PPEQEATIAV RSSSSSDLTA EKRPDKIIAC PRCKSMETKF CYFNNYNVNQ PRHFCKGCHR YWTAGGALRN
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)