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AT1G36060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 4 (TAIR:AT1G78080.1); Has 6040 Blast hits to 5770 proteins in 261 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 5982; Viruses - 4; Other Eukaryotes - 47 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXQSeggNOG:ENOG41103RZEMBL:AC006228EMBL:AC021666
EMBL:AK228415EMBL:BT005758EMBL:BT006078EMBL:CP002684
EnsemblPlants:AT1G36060EnsemblPlants:AT1G36060.1entrez:840510Gene3D:3.30.730.10
GeneID:840510Genevisible:Q9SKW5GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009415
GO:GO:0009873Gramene:AT1G36060.1hmmpanther:PTHR31657hmmpanther:PTHR31657:SF9
HOGENOM:HOG000239817InParanoid:Q9SKW5InterPro:IPR001471InterPro:IPR016177
KEGG:ath:AT1G36060OMA:FYKSASTPaxDb:Q9SKW5Pfam:PF00847
Pfam:Q9SKW5Pfscan:PS51032PhylomeDB:Q9SKW5PIR:E86482
PRIDE:Q9SKW5PRINTS:PR00367PRO:PR:Q9SKW5PROSITE:PS51032
ProteinModelPortal:Q9SKW5Proteomes:UP000006548RefSeq:NP_564468.1SMART:SM00380
SMR:Q9SKW5STRING:3702.AT1G36060.1SUPFAM:SSF54171TAIR:AT1G36060
UniGene:At.39425UniProt:Q9SKW5
Coordinates (TAIR10) chr1:-:13454718..13455662
Molecular Weight (calculated) 34309.40 Da
IEP (calculated) 5.61
GRAVY (calculated) -0.69
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MADLFGGGHG GELMEALQPF YKSASTSASN PAFASSNDAF ASAPNDLFSS SSYYNPHASL FPSHSTTSYP DIYSGSMTYP SSFGSDLQQP ENYQSQFHYQ
101: NTITYTHQDN NTCMLNFIEP SQPGFMTQPG PSSGSVSKPA KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEEAAL AYDRAAFKLR GDSARLNFPA
201: LRYQTGSSPS DTGEYGPIQA AVDAKLEAIL AEPKNQPGKT ERTSRKRAKA AASSAEQPSA PQQHSGSGES DGSGSPTSDV MVQEMCQEPE MPWNENFMLG
301: KCPSYEIDWA SILS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)