suba logo
AT4G06746.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : related to AP2 9
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.9). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1 and RAP2.10.
Computational
Description (TAIR10)
related to AP2 9 (RAP2.9); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DREB and EAR motif protein 3 (TAIR:AT2G23340.1); Has 5531 Blast hits to 5400 proteins in 241 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5523; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
EMBL:AB073166EMBL:AF003102EMBL:AY560869EMBL:BT024689
EMBL:CP002687EMBL:Z37270EnsemblPlants:AT4G06746EnsemblPlants:AT4G06746.1
entrez:826148Gene3D:3.30.730.10GeneID:826148GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009873
Gramene:AT4G06746.1hmmpanther:PTHR31729hmmpanther:PTHR31729:SF0HOGENOM:HOG000237624
InParanoid:Q8W3M3InterPro:IPR001471InterPro:IPR016177iPTMnet:Q8W3M3
KEGG:ath:AT4G06746KO:K09286OMA:NKLPEAYPaxDb:Q8W3M3
Pfam:PF00847Pfam:Q8W3M3Pfscan:PS51032PhylomeDB:Q8W3M3
PRIDE:Q8W3M3PRINTS:PR00367PRO:PR:Q8W3M3PROSITE:PS51032
ProteinModelPortal:Q8W3M3Proteomes:UP000006548RefSeq:NP_849340.1SMART:SM00380
SMR:Q8W3M3STRING:3702.AT4G06746.1SUPFAM:SSF54171TAIR:AT4G06746
tair10-symbols:DEAR5tair10-symbols:RAP2.9UniGene:At.47204UniProt:Q8W3M3
Coordinates (TAIR10) chr4:-:4074093..4074545
Molecular Weight (calculated) 17200.00 Da
IEP (calculated) 10.55
GRAVY (calculated) -0.68
Length 150 amino acids
Sequence (TAIR10)
(BLAST)
001: MVIQYKRKQE FPMVKEGMVM TEKPKRNLIS SNEKRYKGIR MRKWGKWVAE IREPNKRSRI WLGSYKTAVA AARAYDTAVF YLRGPSARLN FPEEVFKDGN
101: GGEGLGGDMS PTLIRKKAAE VGARVDAELR LENRMVENLD MNKLPEAYGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)