AT4G06746.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : related to AP2 9 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.9). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1 and RAP2.10. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
related to AP2 9 (RAP2.9); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DREB and EAR motif protein 3 (TAIR:AT2G23340.1); Has 5531 Blast hits to 5400 proteins in 241 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5523; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:4074093..4074545 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 17200.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.55 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 150 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVIQYKRKQE FPMVKEGMVM TEKPKRNLIS SNEKRYKGIR MRKWGKWVAE IREPNKRSRI WLGSYKTAVA AARAYDTAVF YLRGPSARLN FPEEVFKDGN 101: GGEGLGGDMS PTLIRKKAAE VGARVDAELR LENRMVENLD MNKLPEAYGL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)