suba logo
AT2G45800.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GATA type zinc finger transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT3G61230.1); Has 6011 Blast hits to 3830 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 5054; Fungi - 46; Plants - 459; Viruses - 0; Other Eukaryotes - 452 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ITHMeggNOG:ENOG410ZTJUEMBL:AC004665EMBL:AK118044
EMBL:BT005586EMBL:CP002685EnsemblPlants:AT2G45800EnsemblPlants:AT2G45800.1
EnsemblPlants:AT2G45800.2entrez:819188ExpressionAtlas:O80839Gene3D:2.10.110.10
GeneID:819188Genevisible:O80839GO:GO:0005737GO:GO:0005856
GO:GO:0008270GO:GO:0051015GO:GO:0051017hmmpanther:PTHR24206
hmmpanther:PTHR24206:SF22HOGENOM:HOG000111235InParanoid:O80839InterPro:IPR001781
KEGG:ath:AT2G45800OMA:LEGNTYHPaxDb:O80839Pfam:O80839
Pfam:PF00412Pfscan:PS50023PhylomeDB:O80839PIR:T02467
PRIDE:O80839PRO:PR:O80839PROSITE:PS00478PROSITE:PS50023
ProteinModelPortal:O80839Proteomes:UP000006548RefSeq:NP_001031545.1RefSeq:NP_182104.1
scanprosite:PS00478SMART:SM00132SMR:O80839STRING:3702.AT2G45800.1
SUPFAM:SSF57716TAIR:AT2G45800UniGene:At.20569UniGene:At.48595
UniProt:O80839
Coordinates (TAIR10) chr2:-:18858153..18859007
Molecular Weight (calculated) 24944.00 Da
IEP (calculated) 6.92
GRAVY (calculated) -0.67
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFTGTLDKC KACDKTVYVM DLLTLEGNTY HKSCFRCTHC KGTLVISNYS SMDGVLYCKP HFEQLFKESG NYSKNFQAGK TEKPNDHLTR TPSKLSSFFS
101: GTQDKCATCK KTVYPLEKVT MEGESYHKTC FRCTHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNH VHQAAANHRR SASSGGASPP SDDHKPDDTA
201: SIPEAKEDDA APEAAGEEEP EPVVES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)