suba logo
AT3G01700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : arabinogalactan protein 11
Curator
Summary (TAIR10)
Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP11 function results in decreased fertility due to defects in pollen tube growth.
Computational
Description (TAIR10)
arabinogalactan protein 11 (AGP11); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 6 (TAIR:AT5G14380.1); Has 18682 Blast hits to 7914 proteins in 897 species: Archae - 47; Bacteria - 4443; Metazoa - 2565; Fungi - 1546; Plants - 1733; Viruses - 648; Other Eukaryotes - 7700 (source: NCBI BLink).
Protein Annotations
EMBL:AC009325EMBL:AC010797EMBL:AF195892EMBL:AK118478
EMBL:BT004733EMBL:CP002686EnsemblPlants:AT3G01700EnsemblPlants:AT3G01700.1
entrez:821093GeneID:821093Genevisible:Q9FVE0GO:GO:0005886
GO:GO:0009860GO:GO:0031225Gramene:AT3G01700.1HOGENOM:HOG000033852
InParanoid:Q9FVE0iPTMnet:Q9FVE0KEGG:ath:AT3G01700OMA:MAICITR
PaxDb:Q9FVE0Pfam:Q9FVE0PRIDE:Q9FVE0PRO:PR:Q9FVE0
ProteinModelPortal:Q9FVE0Proteomes:UP000006548RefSeq:NP_566146.1STRING:3702.AT3G01700.1
TAIR:AT3G01700tair10-symbols:AGP11tair10-symbols:ATAGP11TMHMM:TMhelix
UniGene:At.20330UniProt:Q9FVE0
Coordinates (TAIR10) chr3:+:258981..259391
Molecular Weight (calculated) 12992.90 Da
IEP (calculated) 4.09
GRAVY (calculated) 0.06
Length 136 amino acids
Sequence (TAIR10)
(BLAST)
001: MARLFVVVAL LALAVGTVFA ADAPSAAPTA SPTKSPTKAP AAAPKSSAAA PKASSPVAEE PTPEDDYSAA SPSDSAEAPT VSSPPAPTPE ADGPSSDGPS
101: SDGPAAAESP KSGATTNVKL SIAGTVAAAG FFIFSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)