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AT5G14380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24270628 (2013): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : arabinogalactan protein 6
Curator
Summary (TAIR10)
Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP6 function results in decreased fertility due to defects in pollen tube growth.
Computational
Description (TAIR10)
arabinogalactan protein 6 (AGP6); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 11 (TAIR:AT3G01700.1); Has 37567 Blast hits to 16356 proteins in 1290 species: Archae - 94; Bacteria - 9504; Metazoa - 8118; Fungi - 4708; Plants - 3313; Viruses - 1498; Other Eukaryotes - 10332 (source: NCBI BLink).
Protein Annotations
BioGrid:16566eggNOG:ENOG410JTS1eggNOG:ENOG41107K9EMBL:AJ012459
EMBL:AK229630EMBL:AL163817EMBL:BT006161EMBL:BT008563
EMBL:CP002688EnsemblPlants:AT5G14380EnsemblPlants:AT5G14380.1entrez:831289
GeneID:831289Genevisible:Q9LY91GO:GO:0005886GO:GO:0009860
GO:GO:0010208GO:GO:0031012GO:GO:0031225Gramene:AT5G14380.1
HOGENOM:HOG000033852InParanoid:Q9LY91KEGG:ath:AT5G14380MINT:MINT-8062217
OMA:FGDAMAPPaxDb:Q9LY91Pfam:Q9LY91PIR:T48611
PIR:T52587PRO:PR:Q9LY91ProteinModelPortal:Q9LY91Proteomes:UP000006548
RefSeq:NP_196942.1STRING:3702.AT5G14380.1TAIR:AT5G14380tair10-symbols:AGP6
TMHMM:TMhelixUniGene:At.501UniProt:Q9LY91
Coordinates (TAIR10) chr5:-:4636088..4636540
Molecular Weight (calculated) 14569.70 Da
IEP (calculated) 5.00
GRAVY (calculated) -0.09
Length 150 amino acids
Sequence (TAIR10)
(BLAST)
001: MARQFVVLVL LTLTIATAFA ADAPSASPKK SPSPTAAPTK APTATTKAPS APTKAPAAAP KSSSASSPKA SSPAAEGPVP EDDYSASSPS DSAEAPTVSS
101: PPAPTPDSTS AADGPSDGPT AESPKSGAVT TAKFSVVGTV ATVGFFFFSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)