AT5G14380.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : arabinogalactan protein 6 | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP6 function results in decreased fertility due to defects in pollen tube growth. | ||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
arabinogalactan protein 6 (AGP6); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 11 (TAIR:AT3G01700.1); Has 37567 Blast hits to 16356 proteins in 1290 species: Archae - 94; Bacteria - 9504; Metazoa - 8118; Fungi - 4708; Plants - 3313; Viruses - 1498; Other Eukaryotes - 10332 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:4636088..4636540 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 14569.70 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.00 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||
Length | 150 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MARQFVVLVL LTLTIATAFA ADAPSASPKK SPSPTAAPTK APTATTKAPS APTKAPAAAP KSSSASSPKA SSPAAEGPVP EDDYSASSPS DSAEAPTVSS 101: PPAPTPDSTS AADGPSDGPT AESPKSGAVT TAKFSVVGTV ATVGFFFFSF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)