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AT3G13400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SKU5 similar 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKU5 similar 13 (sks13); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 14 (TAIR:AT1G55560.1); Has 5231 Blast hits to 5185 proteins in 974 species: Archae - 4; Bacteria - 1633; Metazoa - 272; Fungi - 1906; Plants - 1265; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G13400-MONOMEReggNOG:COG2132eggNOG:KOG1263EMBL:AP000603
EMBL:AY056409EMBL:AY072225EMBL:AY096473EMBL:CP002686
EnsemblPlants:AT3G13400EnsemblPlants:AT3G13400.1entrez:820540Gene3D:2.60.40.420
GeneID:820540GO:GO:0005507GO:GO:0009505GO:GO:0009506
GO:GO:0016722Gramene:AT3G13400.1gramene_pathway:1.10.3.3gramene_pathway:PWY-2261
hmmpanther:PTHR11709hmmpanther:PTHR11709:SF27HOGENOM:HOG000241637InterPro:IPR001117
InterPro:IPR008972InterPro:IPR011706InterPro:IPR011707KEGG:ath:AT3G13400
OMA:NITRTFKPfam:PF00394Pfam:PF07731Pfam:PF07732
PhylomeDB:Q9LJF1Proteomes:UP000006548RefSeq:NP_187948.1SMR:Q9LJF1
STRING:3702.AT3G13400.1SUPFAM:SSF49503TAIR:AT3G13400tair10-symbols:sks13
UniGene:At.8258UniProt:Q9LJF1
Coordinates (TAIR10) chr3:+:4355257..4357305
Molecular Weight (calculated) 61657.40 Da
IEP (calculated) 9.48
GRAVY (calculated) -0.26
Length 551 amino acids
Sequence (TAIR10)
(BLAST)
001: MQGGRLLTVL VCLASTVALV SAGDPYFYYT WNVTYGTAAP LGIPQQVILI NGQFPGPNLN STSNNNVVIN VFNNLDEPFL LTWSGLQHRK NSWQDGVTGT
101: SCPIPAGTNF TYHFQPKDQI GSYFYYPSTA LHRFAGGFGG LRVNSRLLIP VPYADPEDDR TILINDWYAK SHTALKNFLD SGRTLGSPDG VLINGKSGKL
201: GGNNAPLFTM KPGKTYKYRI CNVGFKSTLN FRIQGHKMKL VEMEGSHVLQ NDYDSLDVHV GQCFAVLVTA DQVAKNYYMV ASTRFLKKEV STVGVMSYEG
301: SNVQASSDIP KAPVGWAWSL NQFRSFRWNL TASAARPNPQ GSYHYGKINI TRTIKLANTK NLVNGKVRFG FNGVSHVDTE TPLKLAEYFG MSEKVFKYNV
401: IKDEPAAKIT TLTVEPNVLN ITFRTFVEVV FENHEKSMQS FHLDGYSFFA VASEPGRWTP EKRNNYNLLD AVSRHTVQVY PKSWSAILLT FDNAGMWNIR
501: SENWERRYLG QQLYVSVLSP EKSLRDEYNI PLNTNLCGIV KGLPLPTPYT I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)