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AT5G07430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G07420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G07430-MONOMEREC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410JXDD
EMBL:AL163912EMBL:BX830118EMBL:CP002688EnsemblPlants:AT5G07430
EnsemblPlants:AT5G07430.1entrez:830634Gene3D:2.160.20.10GeneID:830634
Genevisible:Q9LY17GO:GO:0005576GO:GO:0005618GO:GO:0030599
GO:GO:0042545GO:GO:0045330GO:GO:0045490Gramene:AT5G07430.1
gramene_pathway:3.1.1.11gramene_pathway:PWY-1081hmmpanther:PTHR31321hmmpanther:PTHR31321:SF23
HOGENOM:HOG000217409InParanoid:Q9LY17InterPro:IPR000070InterPro:IPR011050
InterPro:IPR012334KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT5G07430
OMA:IKNTAPMPaxDb:Q9LY17Pfam:PF01095Pfam:Q9LY17
PhylomeDB:Q9LY17PIR:T49882PRIDE:Q9LY17PRO:PR:Q9LY17
ProteinModelPortal:Q9LY17Proteomes:UP000006548RefSeq:NP_196360.1SMR:Q9LY17
STRING:3702.AT5G07430.1SUPFAM:SSF51126TAIR:AT5G07430UniGene:At.27768
UniPathway:UPA00545UniProt:Q9LY17
Coordinates (TAIR10) chr5:+:2352549..2354069
Molecular Weight (calculated) 39912.70 Da
IEP (calculated) 9.11
GRAVY (calculated) -0.23
Length 361 amino acids
Sequence (TAIR10)
(BLAST)
001: MGYISMSVVA FLVVFASPVV LATDTDPIPE NRAQIPQWFK TNVKPYSQRK GTLDPALEAA EAARQIITVN QKGGANFKTL NEAIKSIPTG NKNRVIIKLA
101: PGVYNEKVTI DIARPFITLL GQPGAETVLT YHGTAAQYGT VESATLIVWA EYFQAAHLTI KNTAPMPKPG SQGQALAMRI NADKAAFYSC RFHGFQDTLC
201: DDKGNHFFKD CYIEGTYDFI FGRGASLYLN TQLHAVGDGL RVITAQGRQS ATEQNGYTFV HCKVTGTGTG IYLGRSWMSH PKVVYAFTEM TSVVNPSGWR
301: ENLNRGYDKT VFYGEYKCFG PGSHLEKRVP YTQDIDKNEV TPFLTLGYIK GSTWLLPPPK Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)