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AT5G06150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.953
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Cyclin family protein
Curator
Summary (TAIR10)
Encodes a cyclin whose expression is reduced in response to high salt.
Computational
Description (TAIR10)
CYC1BAT; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN B1;3 (TAIR:AT3G11520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:15781DNASU:830502eggNOG:COG5024eggNOG:KOG0653EMBL:AP002544EMBL:CP002688EMBL:L27223
EnsemblPlants:AT5G06150EnsemblPlants:AT5G06150.1entrez:830502Gene3D:1.10.472.10GeneID:830502Genevisible:Q39067GO:GO:0005634
GO:GO:0005737GO:GO:0007067GO:GO:0010332GO:GO:0051301Gramene:AT5G06150.1hmmpanther:PTHR10177hmmpanther:PTHR10177:SF247
HOGENOM:HOG000167672InParanoid:Q39067IntAct:Q39067InterPro:IPR004367InterPro:IPR006671InterPro:IPR013763KEGG:ath:AT5G06150
KO:K05868OMA:MSDPEMEPaxDb:Q39067Pfam:PF00134Pfam:PF02984Pfam:Q39067PhylomeDB:Q39067
PIR:S65734PRIDE:Q39067PRO:PR:Q39067PROSITE:PS00292ProteinModelPortal:Q39067Proteomes:UP000006548RefSeq:NP_196233.1
scanprosite:PS00292SMART:SM00385SMART:SM01332SMR:Q39067STRING:3702.AT5G06150.1SUPFAM:SSF47954TAIR:AT5G06150
tair10-symbols:CYC1BATtair10-symbols:CYCB1;2UniGene:At.8011UniProt:Q39067
Coordinates (TAIR10) chr5:-:1859542..1861570
Molecular Weight (calculated) 49849.70 Da
IEP (calculated) 9.76
GRAVY (calculated) -0.26
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)