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AT4G34160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CYCLIN D3;1
Curator
Summary (TAIR10)
encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.
Computational
Description (TAIR10)
CYCLIN D3;1 (CYCD3;1); CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D3;2 (TAIR:AT5G67260.1); Has 3155 Blast hits to 3153 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 1504; Fungi - 362; Plants - 1012; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).
Protein Annotations
BioGrid:14846eggNOG:ENOG410XRKCeggNOG:KOG0656EMBL:AK221712
EMBL:AL021961EMBL:AL161584EMBL:CP002687EMBL:X83371
EnsemblPlants:AT4G34160EnsemblPlants:AT4G34160.1entrez:829564Gene3D:1.10.472.10
GeneID:829564Genevisible:P42753GO:GO:0000082GO:GO:0005634
GO:GO:0007067GO:GO:0009735GO:GO:0009744GO:GO:0048316
GO:GO:0051301Gramene:AT4G34160.1hmmpanther:PTHR10177hmmpanther:PTHR10177:SF251
HOGENOM:HOG000242458InParanoid:P42753IntAct:P42753InterPro:IPR004367
InterPro:IPR006671InterPro:IPR013763iPTMnet:P42753KEGG:ath:AT4G34160
KO:K14505OMA:FLNKCHRPaxDb:P42753Pfam:P42753
Pfam:PF00134Pfam:PF02984PhylomeDB:P42753PIR:T05420
PRO:PR:P42753PROSITE:PS00292ProteinModelPortal:P42753Proteomes:UP000006548
RefSeq:NP_195142.1scanprosite:PS00292SMART:SM00385SMART:SM01332
SMR:P42753STRING:3702.AT4G34160.1SUPFAM:SSF47954TAIR:AT4G34160
tair10-symbols:CYCD3tair10-symbols:CYCD3;1UniGene:At.22721UniProt:P42753
Coordinates (TAIR10) chr4:+:16357903..16359304
Molecular Weight (calculated) 42703.80 Da
IEP (calculated) 4.62
GRAVY (calculated) -0.25
Length 376 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)