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AT2G31270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At2g31270
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homolog of yeast CDT1 A
Curator
Summary (TAIR10)
Encodes a cyclin-dependent protein kinase. Involved in nuclear DNA replication and plastid division. Located in nucleus and chloroplast.
Computational
Description (TAIR10)
homolog of yeast CDT1 A (CDT1A); FUNCTIONS IN: protein binding, cyclin-dependent protein kinase activity; INVOLVED IN: chloroplast organization, DNA replication; LOCATED IN: chloroplast, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA replication factor CDT1-like (InterPro:IPR014939); BEST Arabidopsis thaliana protein match is: homolog of yeast CDT1 B homolog of yeast CDT1 B (TAIR:AT3G54710.1); Has 1317 Blast hits to 1078 proteins in 213 species: Archae - 6; Bacteria - 83; Metazoa - 600; Fungi - 201; Plants - 122; Viruses - 41; Other Eukaryotes - 264 (source: NCBI BLink).
Protein Annotations
BioGrid:3032eggNOG:ENOG410XT37eggNOG:KOG4762EMBL:AC006593EMBL:AJ421408EMBL:AY131998EMBL:CP002685
EnsemblPlants:AT2G31270EnsemblPlants:AT2G31270.1entrez:817684GeneID:817684Genevisible:Q9SJW9GO:GO:0004693GO:GO:0005634
GO:GO:0006260GO:GO:0007049GO:GO:0009507GO:GO:0009658GO:GO:0019901GO:GO:0048229GO:GO:0051276
GO:GO:0051726GO:GO:0070182Gramene:AT2G31270.1hmmpanther:PTHR28637hmmpanther:PTHR28637:SF1HOGENOM:HOG000240675InParanoid:Q9SJW9
IntAct:Q9SJW9InterPro:IPR011991InterPro:IPR014939InterPro:IPR032054iPTMnet:Q9SJW9KEGG:ath:AT2G31270KO:K10727
MINT:MINT-7303919OMA:DPWSSKTPaxDb:Q9SJW9Pfam:PF08839Pfam:PF16679Pfam:Q9SJW9PhylomeDB:Q9SJW9
PIR:F84718PRIDE:Q9SJW9PRO:PR:Q9SJW9ProteinModelPortal:Q9SJW9Proteomes:UP000006548RefSeq:NP_180685.1SMART:SM01075
SMR:Q9SJW9STRING:3702.AT2G31270.1SUPFAM:SSF46785TAIR:AT2G31270tair10-symbols:ATCDT1Atair10-symbols:CDT1tair10-symbols:CDT1A
UniGene:At.38242UniProt:Q9SJW9
Coordinates (TAIR10) chr2:+:13329037..13331544
Molecular Weight (calculated) 63743.30 Da
IEP (calculated) 9.87
GRAVY (calculated) -0.57
Length 571 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)