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AT1G22070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TGA1A-related gene 3
Curator
Summary (TAIR10)
Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties.
Computational
Description (TAIR10)
TGA1A-related gene 3 (TGA3); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT1G77920.1); Has 1024 Blast hits to 1024 proteins in 132 species: Archae - 0; Bacteria - 78; Metazoa - 5; Fungi - 45; Plants - 790; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKSNeggNOG:ENOG410YEGWEMBL:BT026034EnsemblPlants:AT1G22070EnsemblPlants:AT1G22070.1entrez:838812ExpressionAtlas:Q147Q9
GeneID:838812GO:GO:0003700GO:GO:0006351GO:GO:0043565Gramene:AT1G22070.1hmmpanther:PTHR22952hmmpanther:PTHR22952:SF203
IntAct:Q147Q9InterPro:IPR004827InterPro:IPR025422KEGG:ath:AT1G22070KO:K14431ncoils:CoilOMA:EMEYTHW
PaxDb:Q147Q9Pfam:PF07716Pfam:PF14144Pfam:Q39234Pfscan:PS50217PhylomeDB:Q147Q9PROSITE:PS00036
PROSITE:PS50217ProteinModelPortal:Q147Q9RefSeq:NP_564156.1scanprosite:PS00036SMART:SM00338SMR:Q147Q9STRING:3702.AT1G22070.1
SUPFAM:SSF57959TAIR:AT1G22070tair10-symbols:TGA3UniGene:At.15614UniProt:Q147Q9UniProt:Q39234
Coordinates (TAIR10) chr1:+:7789651..7791821
Molecular Weight (calculated) 43757.60 Da
IEP (calculated) 6.13
GRAVY (calculated) -0.64
Length 384 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMMSSSSST TQVVSFRDMG MYEPFQQLSG WESPFKSDIN NITSNQNNNQ SSSTTLEVDA RPEADDNNRV NYTSVYNNSL EAEPSSNNDQ DEDRINDKMK
101: RRLAQNREAA RKSRLRKKAH VQQLEESRLK LSQLEQELVR ARQQGLCVRN SSDTSYLGPA GNMNSGIAAF EMEYTHWLEE QNRRVSEIRT ALQAHIGDIE
201: LKMLVDSCLN HYANLFRMKA DAAKADVFFL MSGMWRTSTE RFFQWIGGFR PSELLNVVMP YVEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE
301: SIAIQIKVVE SVNHGAPMAS AMENLQALES FVNQADHLRQ QTLQQMSKIL TTRQAARGLL ALGEYFHRLR ALSSLWAARP REHT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)