AT4G12100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cullin family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cullin family protein; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cullin-RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin4 (TAIR:AT5G46210.1); Has 1267 Blast hits to 1267 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 680; Fungi - 268; Plants - 230; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7246453..7248127 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50246.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.88 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||
| Length | 434 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKRSISPDPF SSTKSPKLVH HSPDDGGAEG NPYRLPFTLS DENLSCLPIS QAREPPPIFN LDPNSVKDTQ DRNKLYLAKA WDLLKPAIKI ILDDDEYKKP 101: GDVLCFTTIF RAVKRACLGD PRQSELVFNL VKHECEPHIA ELIQSLEKNC SGSDDPSVFL PHVYNRWLDF KRKMSLVSDV AMYQTLNGLT LWDVGQKLFH 201: KQLSMAPQLQ DQVITGILRL ITDERLGKAA NNTSDLLKNL MDMFRMQWQC TYVYKDPFLD STSKFYAEEA EQVLQRSDIS HYLKYVERTF LAEEEKCDKH 301: YFFFSSSRSR LMKVLKSQLL EAHSSFLEEG FMLLMDESLI DDLRRMYRLF SMVDSEDYID RILRAYILAK GEGARQEGSL QELHTSIDKI WHQCFGQDDL 401: LDKTIRDCFE GFGLHVPGEF SDQLQWIDDD DDED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)