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AT4G12100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Cullin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cullin family protein; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cullin-RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin4 (TAIR:AT5G46210.1); Has 1267 Blast hits to 1267 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 680; Fungi - 268; Plants - 230; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5647eggNOG:KOG2167EMBL:AL049638EMBL:AL161533
EMBL:AY133688EMBL:CP002687EnsemblPlants:AT4G12100EnsemblPlants:AT4G12100.1
entrez:826818GeneID:826818GO:GO:0006511Gramene:AT4G12100.1
hmmpanther:PTHR11932hmmpanther:PTHR11932:SF27HOGENOM:HOG000153571InterPro:IPR001373
InterPro:IPR016159KEGG:ath:AT4G12100KO:K10609OMA:HECEPHI
PaxDb:Q9SZ75Pfam:PF00888Pfam:Q9SZ75PhylomeDB:Q9SZ75
PIR:T06617PRIDE:Q9SZ75PRO:PR:Q9SZ75ProteinModelPortal:Q9SZ75
Proteomes:UP000006548RefSeq:NP_192947.1SMR:Q9SZ75STRING:3702.AT4G12100.1
SUPFAM:SSF74788TAIR:AT4G12100UniGene:At.33506UniProt:Q9SZ75
Coordinates (TAIR10) chr4:-:7246453..7248127
Molecular Weight (calculated) 50246.70 Da
IEP (calculated) 4.88
GRAVY (calculated) -0.47
Length 434 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRSISPDPF SSTKSPKLVH HSPDDGGAEG NPYRLPFTLS DENLSCLPIS QAREPPPIFN LDPNSVKDTQ DRNKLYLAKA WDLLKPAIKI ILDDDEYKKP
101: GDVLCFTTIF RAVKRACLGD PRQSELVFNL VKHECEPHIA ELIQSLEKNC SGSDDPSVFL PHVYNRWLDF KRKMSLVSDV AMYQTLNGLT LWDVGQKLFH
201: KQLSMAPQLQ DQVITGILRL ITDERLGKAA NNTSDLLKNL MDMFRMQWQC TYVYKDPFLD STSKFYAEEA EQVLQRSDIS HYLKYVERTF LAEEEKCDKH
301: YFFFSSSRSR LMKVLKSQLL EAHSSFLEEG FMLLMDESLI DDLRRMYRLF SMVDSEDYID RILRAYILAK GEGARQEGSL QELHTSIDKI WHQCFGQDDL
401: LDKTIRDCFE GFGLHVPGEF SDQLQWIDDD DDED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)