AT3G18210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G22950.1); Has 407 Blast hits to 406 proteins in 80 species: Archae - 0; Bacteria - 16; Metazoa - 257; Fungi - 0; Plants - 94; Viruses - 3; Other Eukaryotes - 37 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6238264..6240396 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45181.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.24 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||
| Length | 394 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSEQREGSQ ETTTTTVEGN GTIAGQNSHS AAPTTLRATS TMVSCQRLRL NPNNEHRPDS YEDLQLDFPN SVYSSLEKYL PPNMLVSNRD EKIKFMTDIM 101: LRHLPHGERS RAQRHSDYRL KITTNYQPLH KELYTLVPTV CFVPAFLKAI NENTEESFRN IISEPSPGVF VFDMLQPSFC EMMLAEIDNF ERWVGETKFR 201: IMRPNTMNKY GAVLDDFGLD TMLDKLMEGF IRPISKVFFS DVGGATLDSH HGFVVEYGKD RDVDLGFHVD DSEVTLNVCL GNQFVGGELF FRGTRCEKHV 301: NTATKADETY DYCHIPGQAV LHRGRHRHGA RATTCGHRVN MLLWCRSSVF RELKTHHKDF SSWCGECFCE KRDEKVRSID ALRKKLFKPR QTQA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)