AT5G13610.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF155) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF155); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF155 (InterPro:IPR003734); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF155) (TAIR:AT1G69380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:4383073..4384808 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46203.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.64 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||
| Length | 402 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMRSVDVYVK TLGPPVRSIL YSIFTSQQKP SSLPSLPFHF SLRSSSNIPT RCFSNVVAKS NSPIYDFQGF RNLFTERAIS SSTTTPVASA QPQQLQNQNQ 101: HPAEVDEEIS MGLEDEAKLS IPVRAYFFST SVDLRSLIEQ NKQNFIPPTS RMTNYVVLKF GNHSDPTDTT RGRISGSESI YMVVFHYGSI VLFNVREHEV 201: DEYLKVVERH ASGLLPEMRK DEYEVRENPN LDTWMEVGRD FIRLQFLNTD GIRTIGCVLG QSIALDYYGR QVDGMVAEFT EINRQLEITG TFTMKRKKLF 301: QLVGKANVIL ADVILKLGLF ERSDIAWKDA KYGQIWEFLR DEFELTQSFA NLDYKLKFVE HNVRFLQEIL QNRKSATLEW LIIILISMEI AISFYNMSRA 401: SL |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)