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AT1G13180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Actin-like ATPase superfamily protein
Curator
Summary (TAIR10)
Mutant has defect in trichome cell expansion and actin organization resulting in a distorted trichome phenotype.
Computational
Description (TAIR10)
DISTORTED TRICHOMES 1 (DIS1); FUNCTIONS IN: actin binding, structural constituent of cytoskeleton, ATP binding; INVOLVED IN: actin filament organization, multidimensional cell growth, cell morphogenesis, trichome morphogenesis; LOCATED IN: Arp2/3 protein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000), Actin-related protein 3 (InterPro:IPR015623); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT2G42100.1); Has 12406 Blast hits to 12242 proteins in 2483 species: Archae - 6; Bacteria - 5; Metazoa - 5339; Fungi - 3178; Plants - 1454; Viruses - 2; Other Eukaryotes - 2422 (source: NCBI BLink).
Protein Annotations
BioGrid:23116eggNOG:COG5277eggNOG:KOG0678EMBL:AC007357EMBL:AY093149EMBL:BK000427EMBL:BT006584
EMBL:CP002684EnsemblPlants:AT1G13180EnsemblPlants:AT1G13180.1entrez:837876GeneID:837876Genevisible:Q9SAF1GO:GO:0000902
GO:GO:0005524GO:GO:0005829GO:GO:0005885GO:GO:0007015GO:GO:0007275GO:GO:0009825GO:GO:0010090
Gramene:AT1G13180.1hmmpanther:PTHR11937hmmpanther:PTHR11937:SF31HOGENOM:HOG000233339InParanoid:Q9SAF1IntAct:Q9SAF1InterPro:IPR004000
iPTMnet:Q9SAF1KEGG:ath:AT1G13180KO:K18584OMA:KMQRYAVPANTHER:PTHR11937PaxDb:Q9SAF1Pfam:PF00022
Pfam:Q9SAF1PhylomeDB:Q9SAF1PIR:B86266PRIDE:Q9SAF1PRO:PR:Q9SAF1ProteinModelPortal:Q9SAF1Proteomes:UP000006548
RefSeq:NP_172777.1SMART:SM00268SMR:Q9SAF1STRING:3702.AT1G13180.1SUPFAM:SSF53067TAIR:AT1G13180tair10-symbols:ARP3
tair10-symbols:ATARP3tair10-symbols:DIS1UniGene:At.42042UniProt:Q9SAF1
Coordinates (TAIR10) chr1:+:4495394..4498204
Molecular Weight (calculated) 47662.40 Da
IEP (calculated) 5.33
GRAVY (calculated) -0.27
Length 427 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)