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AT1G29170.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SCAR family protein
Curator
Summary (TAIR10)
Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.
Computational
Description (TAIR10)
WAVE2; BEST Arabidopsis thaliana protein match is: SCAR family protein (TAIR:AT2G34150.2); Has 1242 Blast hits to 945 proteins in 214 species: Archae - 0; Bacteria - 272; Metazoa - 455; Fungi - 71; Plants - 226; Viruses - 5; Other Eukaryotes - 213 (source: NCBI BLink).
Protein Annotations
BioGrid:25026eggNOG:ENOG410IIJ0eggNOG:ENOG410XRBQEMBL:AC021043
EMBL:AY743925EMBL:CP002684EnsemblPlants:AT1G29170EnsemblPlants:AT1G29170.1
entrez:839791ExpressionAtlas:Q9LP46GeneID:839791GO:GO:0005856
GO:GO:0030036GO:GO:0031209GO:GO:0051127hmmpanther:PTHR12902
HOGENOM:HOG000064550InParanoid:Q9LP46IntAct:Q9LP46InterPro:IPR028288
iPTMnet:Q9LP46ncoils:CoilOMA:SENCISEPANTHER:PTHR12902
PaxDb:Q9LP46Pfam:Q9LP46PhylomeDB:Q9LP46PIR:B86414
PRIDE:Q9LP46PRO:PR:Q9LP46ProteinModelPortal:Q9LP46Proteomes:UP000006548
RefSeq:NP_174212.2STRING:3702.AT1G29170.1TAIR:AT1G29170tair10-symbols:ATSCAR3
tair10-symbols:SCAR3tair10-symbols:WAVE2UniGene:At.51182UniProt:Q9LP46
Coordinates (TAIR10) chr1:-:10190352..10194900
Molecular Weight (calculated) 113036.00 Da
IEP (calculated) 4.78
GRAVY (calculated) -0.77
Length 1020 amino acids
Sequence (TAIR10)
(BLAST)
0001: MPRNVYGMNQ SEVYRNVDRE DPKAILNGVA VTGLVGVLRQ LGDLAEFAAE IFHGIQEEVM ATASRSNQLK IRLQHIEATV PPLEKAMLAQ TTHIHFAYTG
0101: GLEWHPRIPI TQNHLIYDDL PHIIMDPYEE CRGPPRLHLL DKFDINGPGS CLKRYSDPTY FRRASSNLSQ GNKKFQKDKK HCKMKKKKTS SRSRDMSRLA
0201: SLANQNARKT FASFSFSGQT SSTKTTSTSD MEKRYDFQDH HSRSFESRSG SGYNECLSTA TSSLKTGERP KGVFVSSSLT PGSCTIASVL SECETEDAHD
0301: NFQFSPSQGQ AARGSSCVSW DEKAEIVESL GLQTDEASEM VEANSVVDTL DEKPSYGEGI GGVDFHSKDN ENDKSESGLR KRAGIDEVRE IKNGREIVGE
0401: PRDSEQETES EGECFVDALN TIESESENNQ GLQTSQVSSS CGVADERLEK SVCEQETEQN SYSVEDSCRS MDGLMANSFK NEENASSENV SVEMHQQNLQ
0501: AGSDINRLQK NDLCANKDMR NDSGGKDTIT FTFVPGLENS LVDSSNPLIH HGLQENQETE AESSGDLEAF KIWTNGGLLG LKPSKPPVLA MPSSLSPDCK
0601: TEERTVGFAE AEKDKADDLV ENASHRHVLN NSSLATPGTQ NPGSSNGIVM GIVDQRESHE TSSGVFGLSH KFLTSGFRRK DSFAHDRKTV PATIPENDEV
0701: TTERRRFCDQ DINEKTFMDP FRDEAPIDWI TSSPPLQHMK ISLNPADTLQ ASRLKLKFSD GDNTYNTFSS FQLLPETGTS LPDSYSDDDT FCRSSPYMSD
0801: TDYLSDNHSL SNSEPWEESS DSHGRKEQEL YDSFHESRHV DNNAEASPLG IKSESSCVAV NLSYLQNPAE PLPPPFPPMQ WMVSKTPSEK MEDKTQSLQL
0901: QEALRFAFEK HISLPTAKNE LPSMVTSAPK PEIKAHLKNN VREEKQSANA KETETGDFLQ QIRTQQFNLR PVVMTTTSSA TATTDPIINT KISAILEKAN
1001: SIRQAVASKD GDESDTWSDT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)