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AT1G30825.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Arp2/3 complex, 34 kD subunit p34-Arc
Curator
Summary (TAIR10)
Involved in trichome maturation. mutant displays enlarged trichomes
Computational
Description (TAIR10)
DISTORTED TRICHOMES 2 (DIS2); CONTAINS InterPro DOMAIN/s: Arp2/3 complex, 34kDa subunit p34-Arc (InterPro:IPR007188); BEST Arabidopsis thaliana protein match is: actin-related protein C2B (TAIR:AT2G33385.2); Has 407 Blast hits to 407 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 133; Plants - 82; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Protein Annotations
BioGrid:25200eggNOG:ENOG410YKF6eggNOG:KOG2826EMBL:AC004135
EMBL:AK118475EMBL:AY084256EMBL:BT005308EMBL:CP002684
EnsemblPlants:AT1G30825EnsemblPlants:AT1G30825.1entrez:839965GeneID:839965
Genevisible:Q8LGI3GO:GO:0005737GO:GO:0005885GO:GO:0007015
GO:GO:0010090GO:GO:0034314GO:GO:0042995Gramene:AT1G30825.1
hmmpanther:PTHR12058hmmpanther:PTHR12058:SF0HOGENOM:HOG000212535InParanoid:Q8LGI3
IntAct:Q8LGI3InterPro:IPR007188KEGG:ath:AT1G30825KO:K05758
OMA:AIKTTYGPANTHER:PTHR12058PaxDb:Q8LGI3Pfam:PF04045
Pfam:Q8LGI3PhylomeDB:Q8LGI3PIR:B86434PRIDE:Q8LGI3
PRO:PR:Q8LGI3ProteinModelPortal:Q8LGI3Proteomes:UP000006548RefSeq:NP_564364.1
SMR:Q8LGI3STRING:3702.AT1G30825.1SUPFAM:SSF69645TAIR:AT1G30825
tair10-symbols:ARPC2Atair10-symbols:DIS2UniGene:At.21573UniProt:Q8LGI3
Coordinates (TAIR10) chr1:+:10961106..10962999
Molecular Weight (calculated) 36042.80 Da
IEP (calculated) 10.01
GRAVY (calculated) -0.18
Length 318 amino acids
Sequence (TAIR10)
(BLAST)
001: MILLQSHSRF LLQTLLTRAQ NLDKAVELDY QWIEFDDVRY HVQVTMKNPN LLLLSVSLPN PPPEAMSFDG LPLGAIEAIK TTYGTGFQIL DPPRDGFSLT
101: LKLNFSKVRP DEELLTKLAS IREVVMGAPL KIIFKHLASR TVAPELDRLV AIMHRPNETF FLVPQADKVT VAFPMRFKDS VDTILATSFL KEFVEARRAA
201: ALNTAPSCSW SPTAPQELEG APKETLSANA GFVTFVIFPR HVEGKKLDRT VWNLSTFHAY VSYHVKFSEG FMHTRMRRRV ESMIQALDQA KPLEKTRSMN
301: NKSFKRLGLN EVNHTNSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)