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AT5G51980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.982
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: zinc finger WD40 repeat protein 1 (TAIR:AT4G25440.1); Has 29363 Blast hits to 16060 proteins in 578 species: Archae - 38; Bacteria - 4405; Metazoa - 10853; Fungi - 6886; Plants - 3443; Viruses - 0; Other Eukaryotes - 3738 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G51980EnsemblPlants:AT5G51980.1entrez:835273hmmpanther:PTHR22844
hmmpanther:PTHR22844:SF178Pfam:PF00400Pfam:PF00642Pfscan:PS50082
Pfscan:PS50103Pfscan:PS50294scanprosite:PS00678
Coordinates (TAIR10) chr5:-:21113650..21115902
Molecular Weight (calculated) 47290.10 Da
IEP (calculated) 7.53
GRAVY (calculated) -0.23
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFDLNGGNK RVFNRLGGGG GSTRPMAPTD TRQKVCFHWR AGRCNRSPCP YLHRELPGPG PGQGQGPGYT NKRVAEESGF AGPSHRRGPG FNGNSSSSWG
101: RFGGNRTVTK TEKVCNFWVD GNCTYGDKCR YLHCWSKGES FALLTQLDGH EKLVSGIALP SGSDKLYTGS KDETLRVWDC ASGQCTGVLK LGGEIGCVLS
201: EGPWLLVGMP NLVKAWNIET NADQSLSGPV GQVYSLVVGT DLLFAGTQDG SILAWRYNAA TNCFEPSASL TGHTLAVVTL YVGANRLYSG SMDKTIKVWS
301: LDNLQCIQTL TDHSSVVMSL ICWDQFLLSC SLDNTVKIWA AIEGGNLEVT YTHKEEHGVL ALCGVHDAEA KPVLLCACND NTLRLYDLPS FTERGKIFAK
401: QEIRAIQIGP GGIFFTGDGT GQVKVWKWCT EPTAALP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)