AT5G62620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.902 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Galactosyltransferase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, sugar binding, galactosyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT1G74800.1); Has 2311 Blast hits to 2276 proteins in 115 species: Archae - 0; Bacteria - 8; Metazoa - 1663; Fungi - 8; Plants - 578; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25137136..25139764 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77745.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 681 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRKPKLSKLE RLEKFDIFVS LSKQRSVQIL MAVGLLYMLL ITFEIPFVFK TGLSSLSQDP LTRPEKHNSQ RELQERRAPT RPLKSLLYQE SQSESPAQGL 101: RRRTRILSSL RFDPETFNPS SKDGSVELHK SAKVAWEVGR KIWEELESGK TLKALEKEKK KKIEEHGTNS CSLSVSLTGS DLLKRGNIME LPCGLTLGSH 201: ITVVGKPRAA HSEKDPKISM LKEGDEAVKV SQFKLELQGL KAVEGEEPPR ILHLNPRLKG DWSGKPVIEQ NTCYRMQWGS AQRCEGWRSR DDEETVDGQV 301: KCEKWARDDS ITSKEEESSK AASWWLSRLI GRSKKVTVEW PFPFTVDKLF VLTLSAGLEG YHVSVDGKHV TSFPYRTGFT LEDATGLTIN GDIDVHSVFA 401: GSLPTSHPSF SPQRHLELSS NWQAPSLPDE QVDMFIGILS AGNHFAERMA VRRSWMQHKL VKSSKVVARF FVALHSRKEV NVELKKEAEF FGDIVIVPYM 501: DSYDLVVLKT VAICEYGAHQ LAAKFIMKCD DDTFVQVDAV LSEAKKTPTD RSLYIGNINY YHKPLRQGKW SVTYEEWPEE DYPPYANGPG YILSNDISRF 601: IVKEFEKHKL RMFKMEDVSV GMWVEQFNNG TKPVDYIHSL RFCQFGCIEN YLTAHYQSPR QMICLWDKLV LTGKPQCCNM R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)