AT3G05480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cell cycle checkpoint control protein family | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Involved in the regulation of DNA damage repair and homologous recombination. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552); Has 299 Blast hits to 299 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 56; Plants - 50; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1585383..1588238 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48023.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.85 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||
| Length | 439 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELSISGNAL KTLSRSIICL ARVGNELVVQ ASPTQLALHT LNASRSAYQC ITFQSSFFDV YTVSGPQAHF SVLLKAVCSV LRTPLASIDH MSVQLPDHDA 101: SKVKWTLQCY SGMKKTYWIT CNVEPDIQHL SLDRGRFPST LVMHPRNLSK LLGNFQSSLQ EITIIATDQT SFPSDAASEI GGKAVEFRSY VDPTKDGDSL 201: LHTQLWIDPS EEFLQYTHAG DPVDITFSLK ELKAFLAFCE GCEADIHLFF EKAGEPILMA PKFGLGDGSS SSFDATLVLA TMLVSQLQEG IPAEPPEAAN 301: STGGHAAEQV GSRPQERSRQ NASEHPSDHT RVWSELSGTA TKSVNGTEDR PQAQGQPDLD IHRIRNMEIS KGGPVGDTAP AAPPKSQRPT QIDHAEGSRV 401: RVQNQSFSQH HPSNWVDANE EEEDDDEGVE ATPPHNEDY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)