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AT1G21460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24027245 (2013): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nodulin MtN3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT5G53190.1); Has 988 Blast hits to 930 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 221; Fungi - 0; Plants - 643; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
Protein Annotations
BioGrid:23983DIP:DIP-61791NeggNOG:ENOG4111M4ReggNOG:KOG1623
EMBL:AC015447EMBL:AY088391EMBL:BT004185EMBL:BT005476
EMBL:CP002684EnsemblPlants:AT1G21460EnsemblPlants:AT1G21460.1entrez:838744
GeneID:838744Genevisible:Q8L9J7GO:GO:0005783GO:GO:0005789
GO:GO:0005886GO:GO:0005887GO:GO:0034219GO:GO:0051119
GO:GO:0051260Gramene:AT1G21460.1hmmpanther:PTHR10791hmmpanther:PTHR10791:SF44
HOGENOM:HOG000237944InParanoid:Q8L9J7IntAct:Q8L9J7InterPro:IPR004316
KEGG:ath:AT1G21460KO:K15382OMA:IIIPNGCPaxDb:Q8L9J7
Pfam:PF03083Pfam:Q8L9J7PhylomeDB:Q8L9J7PIR:F86347
PRIDE:Q8L9J7PRO:PR:Q8L9J7ProteinModelPortal:Q8L9J7Proteomes:UP000006548
RefSeq:NP_564140.1SMR:Q8L9J7STRING:3702.AT1G21460.1TAIR:AT1G21460
tair10-symbols:AtSWEET1tair10-symbols:SWEET1TMHMM:TMhelixUniGene:At.41655
UniProt:Q8L9J7
Coordinates (TAIR10) chr1:-:7512030..7513281
Molecular Weight (calculated) 27269.90 Da
IEP (calculated) 9.36
GRAVY (calculated) 0.56
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MNIAHTIFGV FGNATALFLF LAPSITFKRI IKNKSTEQFS GIPYPMTLLN CLLSAWYGLP FVSKDNTLVS TINGTGAVIE TVYVLIFLFY APKKEKIKIF
101: GIFSCVLAVF ATVALVSLFA LQGNGRKLFC GLAATVFSII MYASPLSIMR LVVKTKSVEF MPFFLSLFVF LCGTSWFVYG LIGRDPFVAI PNGFGCALGT
201: LQLILYFIYC GNKGEKSADA QKDEKSVEMK DDEKKQNVVN GKQDLQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)