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AT3G26744.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. Mutants are defective in cold-regulated gene expression. Cold stress triggers protein degradation of nuclear GFPICE1 protein, and the RING finger protein HOS1 is required. Sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance.
Computational
Description (TAIR10)
INDUCER OF CBF EXPRESSION 1 (ICE1); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G12860.1); Has 2623 Blast hits to 2616 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 30; Plants - 2572; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:7617DIP:DIP-61175NeggNOG:ENOG410IJE0eggNOG:ENOG4111GT2
EMBL:AB016889EMBL:AB026648EMBL:AK228443EMBL:AY079016
EMBL:AY195621EMBL:BT020379EMBL:CP002686EnsemblPlants:AT3G26744
EnsemblPlants:AT3G26744.1EnsemblPlants:AT3G26744.2EnsemblPlants:AT3G26744.4entrez:822287
ExpressionAtlas:Q9LSE2Gene3D:4.10.280.10GeneID:822287Genevisible:Q9LSE2
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009409GO:GO:0010440GO:GO:0045893GO:GO:0050826
hmmpanther:PTHR31945hmmpanther:PTHR31945:SF13HOGENOM:HOG000085036InParanoid:Q9LSE2
InterPro:IPR011598KEGG:ath:AT3G26744ncoils:CoilOMA:NENHQQN
PaxDb:Q9LSE2Pfam:PF00010Pfam:Q9LSE2Pfscan:PS50888
PhylomeDB:Q9LSE2PRIDE:Q9LSE2PRO:PR:Q9LSE2PROSITE:PS50888
ProteinModelPortal:Q9LSE2Proteomes:UP000006548RefSeq:NP_001030774.1RefSeq:NP_001030776.2
RefSeq:NP_189309.2SMART:SM00353SMR:Q9LSE2STRING:3702.AT3G26744.1
SUPFAM:SSF47459TAIR:AT3G26744tair10-symbols:ATICE1tair10-symbols:ICE1
tair10-symbols:SCRMUniGene:At.25302UniProt:A0A0D5MF12UniProt:Q9LSE2
Coordinates (TAIR10) chr3:-:9832953..9834790
Molecular Weight (calculated) 53542.00 Da
IEP (calculated) 5.12
GRAVY (calculated) -0.52
Length 494 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)