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AT3G14850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.383
endoplasmic reticulum 0.298
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRICHOME BIREFRINGENCE-LIKE 41
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 41 (TBL41); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 38 (TAIR:AT1G29050.1); Has 1268 Blast hits to 1259 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1266; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:6048eggNOG:ENOG410IEPTeggNOG:ENOG41118PYEMBL:AK317777EMBL:AP002061EMBL:AY062682EMBL:AY093337
EMBL:CP002686EnsemblPlants:AT3G14850EnsemblPlants:AT3G14850.1EnsemblPlants:AT3G14850.2entrez:820714ExpressionAtlas:F4IWA8GeneID:820714
Genevisible:F4IWA8GO:GO:0005794GO:GO:0016021GO:GO:0016413GO:GO:0071554hmmpanther:PTHR32285hmmpanther:PTHR32285:SF58
HOGENOM:HOG000238066InParanoid:F4IWA8InterPro:IPR025846InterPro:IPR026057InterPro:IPR029962KEGG:ath:AT3G14850OMA:ACPFIER
PANTHER:PTHR32285PaxDb:F4IWA8Pfam:PF13839Pfam:PF14416PhylomeDB:F4IWA8PRIDE:F4IWA8PRO:PR:F4IWA8
Proteomes:UP000006548RefSeq:NP_188103.2RefSeq:NP_974314.2TAIR:AT3G14850tair10-symbols:TBL41UniGene:At.5811UniProt:Q8W4B3
Coordinates (TAIR10) chr3:+:4996592..4997611
Molecular Weight (calculated) 28375.20 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.19
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MFVGDSLSLN QWQSLACMLH SSVPNSTYTL TTQGSISTYT FKEYGLELKL DRNVYLVDIV REKIGRVLKL DSINDGKNWV EMDTLIFNTW HWWSRRGPAQ
101: PWDLIQIGTN VTKDMDRVAA FEIALGTWGK WVDTVLNTKK TRVFFQGISP SHYKGVLWGE PAAKSCVGQK EPLLGTKYPG GLPAEVGVLK RALGKISKPV
201: TLLDITMLSL LRKDAHPSVY GLGGRNSSGD CSHWCLSGVP DTWNEILYNY MVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)