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AT5G44080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Basic-leucine zipper (bZIP) transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: G-box binding factor 4 (TAIR:AT1G03970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWGDeggNOG:ENOG410ZKZREMBL:AB006703EMBL:AY072075EMBL:AY096660EMBL:BN000023EMBL:CP002688
EnsemblPlants:AT5G44080EnsemblPlants:AT5G44080.1entrez:834431GeneID:834431GO:GO:0003700GO:GO:0043565Gramene:AT5G44080.1
hmmpanther:PTHR22952hmmpanther:PTHR22952:SF184InterPro:IPR004827KEGG:ath:AT5G44080KO:K14432ncoils:CoilOMA:MIDKVEG
Pfam:PF00170Pfscan:PS50217PROSITE:PS00036PROSITE:PS50217Proteomes:UP000006548RefSeq:NP_199221.1scanprosite:PS00036
SMART:SM00338SMR:Q9FNB9STRING:3702.AT5G44080.1SUPFAM:SSF57959TAIR:AT5G44080UniGene:At.43607UniProt:Q9FNB9
Coordinates (TAIR10) chr5:-:17738787..17739734
Molecular Weight (calculated) 34953.10 Da
IEP (calculated) 5.20
GRAVY (calculated) -0.67
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSFQVMRSS NSRNSDLSRR ISSASTSSSS IRPQQQFRRD LTSVGYGGRN DGLYSSNSMT VEGILHDTFA SDPPAPTESS LLDASINLMD ASPAPMEITT
101: TTASDVVDHG GGTETTRGGK SVDEIWREMV SGEGKGMKEE TSEEIMTLED FLAKAAVEDE TAVTASAEDL DVKIPVTNYG FDHSAPPHNP FQMIDKVEGS
201: IVAFGNGLDV YGGGARGKRA RVMVEPLDKA AAQRQRRMIK NRESAARSRE RKQAYQVELE ALAAKLEEEN ELLSKEIEDK RKERYQKLME FVIPVVEKPK
301: QQPPRFLRRI RSLEW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)