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AT5G43700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AUX/IAA transcriptional regulator family protein
Curator
Summary (TAIR10)
Auxin inducible protein similar to transcription factors.
Computational
Description (TAIR10)
AUXIN INDUCIBLE 2-11 (ATAUX2-11); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: AUX/IAA transcriptional regulator family protein (TAIR:AT1G04240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19640eggNOG:ENOG410IX07eggNOG:ENOG410YIDVEMBL:AB026651EMBL:BT005853EMBL:CP002688EMBL:L15450
EMBL:X53435EnsemblPlants:AT5G43700EnsemblPlants:AT5G43700.1entrez:834390ExpressionAtlas:P33077GeneID:834390Genevisible:P33077
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009733GO:GO:0009734GO:GO:0044212
Gramene:AT5G43700.1hmmpanther:PTHR31734hmmpanther:PTHR31734:SF11HOGENOM:HOG000238261InParanoid:P33077IntAct:P33077InterPro:IPR000270
InterPro:IPR003311InterPro:IPR033389KEGG:ath:AT5G43700KO:K14484OMA:RALPDMNPANTHER:PTHR31734PaxDb:P33077
Pfam:P33077Pfam:PF02309Pfscan:PS51745PhylomeDB:P33077PIR:S12243PRIDE:P33077PRO:PR:P33077
PROSITE:PS51745ProteinModelPortal:P33077Proteomes:UP000006548RefSeq:NP_199183.1SMR:P33077STRING:3702.AT5G43700.1SUPFAM:SSF54277
TAIR:AT5G43700tair10-symbols:ATAUX2-11tair10-symbols:IAA4UniGene:At.47260UniProt:P33077UniProt:Q0WTK3
Coordinates (TAIR10) chr5:+:17550465..17551206
Molecular Weight (calculated) 20976.10 Da
IEP (calculated) 5.50
GRAVY (calculated) -0.66
Length 186 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKVDVYDEL VNLKATELRL GLPGTEETVS CGKSNKRVLP EATEKEIEST GKTETASPPK AQIVGWPPVR SYRKNNVQTK KSESEGQGNY VKVSMDGAPY
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)