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AT5G37020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : auxin response factor 8
Curator
Summary (TAIR10)
Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF6 to control stamen elongation and flower maturation. Expression of ARF8 is controlled by miR167.
Computational
Description (TAIR10)
auxin response factor 8 (ARF8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, response to auxin stimulus, fruit development, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 6 (TAIR:AT1G30330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:18923eggNOG:ENOG410IEQ9eggNOG:ENOG410YA3REMBL:AB024026EMBL:AF042196EMBL:AY669790EMBL:CP002688
EnsemblPlants:AT5G37020EnsemblPlants:AT5G37020.1entrez:833672ExpressionAtlas:Q9FGV1Gene3D:2.40.330.10GeneID:833672Genevisible:Q9FGV1
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009733GO:GO:0009734GO:GO:0009908
hmmpanther:PTHR31384hmmpanther:PTHR31384:SF2HOGENOM:HOG000241141InParanoid:Q9FGV1IntAct:Q9FGV1InterPro:IPR000270InterPro:IPR003340
InterPro:IPR010525InterPro:IPR015300KEGG:ath:AT5G37020OMA:MSENLPQPaxDb:Q9FGV1Pfam:PF02362Pfam:PF06507
Pfam:Q9FGV1Pfscan:PS50863Pfscan:PS51745PhylomeDB:Q9FGV1PRIDE:Q9FGV1PRO:PR:Q9FGV1PROSITE:PS50863
PROSITE:PS51745ProteinModelPortal:Q9FGV1Proteomes:UP000006548RefSeq:NP_001078672.1RefSeq:NP_198518.1SMART:SM01019SMR:Q9FGV1
STRING:3702.AT5G37020.1SUPFAM:SSF101936SUPFAM:SSF54277TAIR:AT5G37020tair10-symbols:ARF8tair10-symbols:ATARF8UniGene:At.23446
UniProt:Q9FGV1
Coordinates (TAIR10) chr5:+:14630151..14634106
Molecular Weight (calculated) 90153.10 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.49
Length 811 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)