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AT3G62100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.972
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : indole-3-acetic acid inducible 30
Curator
Summary (TAIR10)
Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA30 lacks the conserved degron (domain II) found in many family members. IAA30 transcripts are induced by auxin treatment and accumulate preferentially in the quiescent center cells of the root meristem. Overexpression of IAA30 leads to defects in gravitropism, root development, root meristem maintenance, and cotyledon vascular development. Target of LEC2 and AGL15. Promotes somatyic embryogenesis.
Computational
Description (TAIR10)
indole-3-acetic acid inducible 30 (IAA30); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: gravitropism, response to auxin stimulus, response to cyclopentenone, somatic embryogenesis, root development; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 20 (TAIR:AT2G46990.1); Has 1798 Blast hits to 1798 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1797; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J18VeggNOG:ENOG410YIRAEMBL:AB493662EMBL:GU348634EMBL:GU348635EMBL:GU348636EMBL:GU348637
EMBL:GU348638EMBL:HM487902EMBL:HM487903EMBL:HM487904EMBL:HM487905EMBL:HM487906EMBL:HM487907
EMBL:HM487908EMBL:HM487909EMBL:HM487910EMBL:HM487911EMBL:HM487912EMBL:HM487913EMBL:HM487914
EnsemblPlants:AT3G62100EnsemblPlants:AT3G62100.1entrez:825383ExpressionAtlas:C0SVF9GeneID:825383GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009734Gramene:AT3G62100.1hmmpanther:PTHR31734hmmpanther:PTHR31734:SF15InterPro:IPR000270InterPro:IPR003311
InterPro:IPR033389KEGG:ath:AT3G62100KO:K14484OMA:EMMIMEEPANTHER:PTHR31734Pfam:PF02309Pfam:Q9M1R4
Pfscan:PS51745PhylomeDB:C0SVF9PROSITE:PS51745RefSeq:NP_191769.1SMR:C0SVF9STRING:3702.AT3G62100.1SUPFAM:SSF54277
TAIR:AT3G62100tair10-symbols:IAA30UniGene:At.50305UniProt:C0SVF9UniProt:Q9M1R4
Coordinates (TAIR10) chr3:+:22995835..22996593
Molecular Weight (calculated) 19239.40 Da
IEP (calculated) 4.39
GRAVY (calculated) -0.47
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGRSSSSS SIESSCKSNP FGVSSSNTRN LSTDLRLGLS FGSSSGQYYN GGDNHEYDGV GAAEEMMIME EEEQNECNSV GSFYVKVNME GVPIGRKIDL
101: LSLNGYHDLI TTLDYMFNAS ILWAEEEDMC SEKSHVLTYA DKEGDWMMVG DVPWEMFLSS VRRLKISRAY HY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)