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AT2G27110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : FAR1-related sequence 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAR1-related sequence 3 (FRS3); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Transcription factor, FAR1-related (InterPro:IPR004330), MULE transposase, conserved domain (InterPro:IPR018289); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 5 (TAIR:AT4G38180.1); Has 1433 Blast hits to 1269 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 39; Plants - 1388; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:2605eggNOG:ENOG410IVJZeggNOG:ENOG410ZPZYEMBL:AC005623
EMBL:AY057491EMBL:BT002690EMBL:CP002685EnsemblPlants:AT2G27110
EnsemblPlants:AT2G27110.1EnsemblPlants:AT2G27110.2entrez:817253ExpressionAtlas:Q9ZVC9
GeneID:817253Genevisible:Q9ZVC9GO:GO:0005634GO:GO:0006355
GO:GO:0008270GO:GO:0009506hmmpanther:PTHR31669hmmpanther:PTHR31669:SF45
HOGENOM:HOG000241939InParanoid:Q9ZVC9IntAct:Q9ZVC9InterPro:IPR004330
InterPro:IPR006564InterPro:IPR007527InterPro:IPR018289InterPro:IPR031052
KEGG:ath:AT2G27110OMA:LWPRQDEPANTHER:PTHR31669PaxDb:Q9ZVC9
Pfam:PF03101Pfam:PF04434Pfam:PF10551Pfam:Q9ZVC9
Pfscan:PS50966PhylomeDB:Q9ZVC9PIR:H84668PRIDE:Q9ZVC9
PRO:PR:Q9ZVC9PROSITE:PS50966Proteomes:UP000006548RefSeq:NP_001031428.1
RefSeq:NP_565636.1RefSeq:NP_850098.1SMART:SM00575STRING:3702.AT2G27110.1
TAIR:AT2G27110tair10-symbols:FRS3UniGene:At.22269UniProt:Q9ZVC9
Coordinates (TAIR10) chr2:-:11576969..11580405
Molecular Weight (calculated) 96262.80 Da
IEP (calculated) 6.35
GRAVY (calculated) -0.43
Length 851 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVHLVEENV SMGNHEIGDE GDVEPSDCSG QNNMDNSLGV QDEIGIAEPC VGMEFNSEKE AKSFYDEYSR QLGFTSKLLP RTDGSVSVRE FVCSSSSKRS
101: KRRLSESCDA MVRIELQGHE KWVVTKFVKE HTHGLASSNM LHCLRPRRHF ANSEKSSYQE GVNVPSGMMY VSMDANSRGA RNASMATNTK RTIGRDAHNL
201: LEYFKRMQAE NPGFFYAVQL DEDNQMSNVF WADSRSRVAY THFGDTVTLD TRYRCNQFRV PFAPFTGVNH HGQAILFGCA LILDESDTSF IWLFKTFLTA
301: MRDQPPVSLV TDQDRAIQIA AGQVFPGARH CINKWDVLRE GQEKLAHVCL AYPSFQVELY NCINFTETIE EFESSWSSVI DKYDLGRHEW LNSLYNARAQ
401: WVPVYFRDSF FAAVFPSQGY SGSFFDGYVN QQTTLPMFFR LYERAMESWF EMEIEADLDT VNTPPVLKTP SPMENQAANL FTRKIFGKFQ EELVETFAHT
501: ANRIEDDGTT STFRVANFEN DNKAYIVTFC YPEMRANCSC QMFEHSGILC RHVLTVFTVT NILTLPPHYI LRRWTRNAKS MVELDEHVSE NGHDSSIHRY
601: NHLCREAIKY AEEGAITAEA YNIALGQLRE GGKKVSVVRK RIGRAAPPSS HGGGIGSGDK TSLSAADTTP LLWPRQDEMI RRFNLNDGGA RAQSVSDLNL
701: PRMAPVSLHR DDTAPENMVA LPCLKSLTWG MESKNTMPGG RVAVINLKLH DYRKFPSADM DVKFQLSSVT LEPMLRSMAY ISEQLSSPAN RVAVINLKLQ
801: DTETTTGESE VKFQVSRDTL GAMLRSMAYI REQLSIVGEL QTESQAKKQR K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)