AT1G16780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Inorganic H pyrophosphatase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
VHP2;2; FUNCTIONS IN: inorganic diphosphatase activity, hydrogen-translocating pyrophosphatase activity; INVOLVED IN: proton transport; LOCATED IN: Golgi apparatus, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: vacuolar H+-pyrophosphatase 2 (TAIR:AT1G78920.2); Has 6490 Blast hits to 6472 proteins in 788 species: Archae - 67; Bacteria - 1308; Metazoa - 5; Fungi - 1; Plants - 281; Viruses - 0; Other Eukaryotes - 4828 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5739468..5743818 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91000.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.86 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.53 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 851 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLKTIYGRCF SRSQYRRIKI QRPSSGAELP RSTGFIPLPL VRRANSLQNM MMDEDVEQAT LVSYSDKPRT FPDMRSKTYS PLIIRILRNL NVRALSVLLL 101: LSFGGIFYMG ARTSPIIVFV FVVCIISFML SVYLTKWVLA KDEGPPEMVQ ISDAIRDGAE GFLRTQYGTI SKMAFLLAFV ILCIYLFRNL TPQQEASGLG 201: RTMSAYITVA AFLLGALCSG IAGYVGMWVS VRANVRVSSA ARRSAREALQ IAVRAGGFSA LVVVGMAVIG IAILYSTFYV WLDVDSPGSM KVTDLPLLLV 301: GYGFGASFVA LFAQLGGGIY TKGADVGADL VGKVEHGIPE DDPRNPAVIA DLVGDNVGDC AARGADLFES IAAEIISAMI LGGTMAQKCK IEDPSGFILF 401: PLVVHSFDLV ISSIGILSIK GTRNASVKSP VEDPMVVLQK GYSLTIILAV LTFGASTRWL LYTEQAPSAW LNFFMCGLVG IITAYVFVWI SRYYTDYKYE 501: PVRTLALASS TGHGTNIIAG VSLGLESTAL PVLVISVAII SAFWLGNTSG LIDEKGNPTG GLFGTAVATM GMLSTAAYVL TMDMFGPIAD NAGGIVEMSQ 601: QPESVREITD VLDAVGNTTK ATTKGFAIGS AALASFLLFS AYMDEVSAFA NVSFKEVDIA IPEVFIGGLL GAMLIFLFSA WACAAVGRTA QEVVNEVRRQ 701: FIERPGIMDY KEKPDYGRCV AIVASSALRE MIKPGALAII SPIAVGFVFR ILGYYTGQPL LGAKVVAAML MFATVCGILM ALFLNTAGGA WDNAKKYIET 801: GALGGKGSDS HKAAVTGDTV GDPFKDTAGP SIHVLIKMLA TITLVMAPIF L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)