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AT5G59380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : methyl-CPG-binding domain 6
Curator
Summary (TAIR10)
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational
Description (TAIR10)
methyl-CPG-binding domain 6 (MBD6); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain protein 5 (TAIR:AT3G46580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21301eggNOG:ENOG4111HPQeggNOG:KOG4161EMBL:AB025604
EMBL:AK227565EMBL:BT004606EMBL:CP002688EnsemblPlants:AT5G59380
EnsemblPlants:AT5G59380.1entrez:836057Gene3D:3.30.890.10GeneID:836057
Genevisible:Q9LTJ1GO:GO:0000122GO:GO:0005634GO:GO:0005720
GO:GO:0005731GO:GO:0006346GO:GO:0006351GO:GO:0008327
GO:GO:0010370GO:GO:0019899GO:GO:0043621Gramene:AT5G59380.1
hmmpanther:PTHR12396hmmpanther:PTHR12396:SF11HOGENOM:HOG000029094InParanoid:Q9LTJ1
InterPro:IPR001739InterPro:IPR016177KEGG:ath:AT5G59380OMA:WSMANAG
PaxDb:Q9LTJ1Pfam:PF01429Pfam:Q9LTJ1Pfscan:PS50982
PhylomeDB:Q9LTJ1PRIDE:Q9LTJ1PRO:PR:Q9LTJ1PROSITE:PS50982
ProteinModelPortal:Q9LTJ1Proteomes:UP000006548RefSeq:NP_200746.1SMART:SM00391
SMR:Q9LTJ1STRING:3702.AT5G59380.1SUPFAM:SSF54171TAIR:AT5G59380
tair10-symbols:ATMBD6tair10-symbols:MBD6UniGene:At.29228UniProt:Q9LTJ1
Coordinates (TAIR10) chr5:+:23952321..23953485
Molecular Weight (calculated) 24451.20 Da
IEP (calculated) 9.57
GRAVY (calculated) -0.81
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDSVAGDFP PDPLLASGAF ISSAGDGTLD SSAKRRPIQG GIGISGSGES VRIGMANGTD QVNHQTESKS RKRAAPGDNW LPPGWRVEDK IRTSGATAGS
101: VDKYYYEPNT GRKFRSRTEV LYYLEHGTSK RGTKKAENTY FNPDHFEGQG SNRVTRTATV PPPPPPPLDF DFKNPPDKVS WSMANAGEEG WIPNIGDVKV
201: QDSVRRDWST AFTFITSRNP SKVSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)