AT5G44740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Y-family DNA polymerase H | ||||||||||||
| Curator Summary (TAIR10) |
Y-family DNA polymerase. Catalyses translesion synthesis in response to UV damage. Functionally interacts with PCNA2. Has a ubiquitin binding motif. | ||||||||||||
| Computational Description (TAIR10) |
Y-family DNA polymerase H (POLH); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair, response to UV-B, error-prone translesion synthesis; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA polymerase eta (InterPro:IPR017061), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963); BEST Arabidopsis thaliana protein match is: DNA-directed DNA polymerases (TAIR:AT5G44750.1); Has 6919 Blast hits to 6912 proteins in 2220 species: Archae - 208; Bacteria - 5107; Metazoa - 464; Fungi - 358; Plants - 146; Viruses - 3; Other Eukaryotes - 633 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18047903..18051197 | ||||||||||||
| Molecular Weight (calculated) | 65194.90 Da | ||||||||||||
| IEP (calculated) | 6.79 | ||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||
| Length | 588 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRLKLLVLRF NWFKFLWLVV VSILAKSGKC ERASIDEVYL DLTDAAESML ADAPPESLEL IDEEVLKSHI LGMNREDGDD FKESVRNWIC REDADRRDKL 101: LSCGIIIVAE LRKQVLKETE FTCSAGIAHN KMLAKLASGM NKPAQQTVVP YAAVQELLSS LPIKKMKQLG GKLGTSLQTD LGVDTVGDLL QFSETKLQEH 201: YGVNTGTWLW NIARGISGEE VQGRLLPKSH GSGKTFPGPR ALKSLSTVQH WLNQLSEELS ERLGSDLEQN KRIASTLTLH ASAFRSKDSD SHKKFPSKSC 301: PMRYGVTKIQ EDAFNLFQAA LREYMGSFGI KPQGNKLETW RITGLSVSAS KIVDIPSGTS SIMRYFQSQP TVPSRSADGC VQGNVAMTAS ASEGCSEQRS 401: TETQAAMPEV DTGVTYTLPN FENQDKDIDL VSEKDVVSCP SNEATDVSTQ SESNKGTQTK KIGRKMNNSK EKNRGMPSIV DIFKNYNATP PSKQETQEDS 501: TVSSASKRAK LSSSSHNSQV NQEVEESRET DWGYKTDEID QSVFDELPVE IQRELRSFLR TNKQFNTGKS KGDGSTSSIA HYFPPLNR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)