suba logo
AT4G32970.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32960.1); Has 552 Blast hits to 489 proteins in 85 species: Archae - 4; Bacteria - 14; Metazoa - 187; Fungi - 12; Plants - 225; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Protein Annotations
EMBL:CP002687EnsemblPlants:AT4G32970EnsemblPlants:AT4G32970.1entrez:829434
GeneID:829434GO:GO:0045739GO:GO:0070531GO:GO:0070552
Gramene:AT4G32970.1hmmpanther:PTHR15660hmmpanther:PTHR15660:SF1InterPro:IPR026126
KEGG:ath:AT4G32970ncoils:CoilOMA:RQFRCELPANTHER:PTHR15660
PaxDb:F4JVV9PRIDE:F4JVV9ProteinModelPortal:F4JVV9Proteomes:UP000006548
RefSeq:NP_195023.3TAIR:AT4G32970UniGene:At.27996UniProt:F4JVV9
Coordinates (TAIR10) chr4:-:15910671..15914300
Molecular Weight (calculated) 71203.00 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.71
Length 638 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEDRATMTG AVATRDSVEP SEDILICVDV DAESTVEMKT TGTNGKPLNR LECLKLAITR FIHDKLSRNS DHRFAFATLS QSAAWLKKEF SNDAKSAAAS
101: LREMSATRSS GPADLTFLFQ EAAQEAKTSR AQNRILRVIL MYCRSSVRPT HDWPINQKLF TLDVMYLHDK SGPDNCTHDV YDSLVDAIER VSEYEGYIFE
201: GSHGLSQSVF RRMSTLLSHP PQRCAQVDLP KPPAKKPAVS CDKSASDSTK GAKQPLEKKP KTNTKRIHSL GKEKTSDFKK YDEKIVGSRV KIWWPLDRAY
301: YEAVVISYCS AKERHRDKEA NQTGCDEEAS TMPQKKKAKT RKEQSTNKQS KMLSPFPPNV KKDDEVPQIS RRQAEQVLSN CASQIKKYLT EAGKLSSVSL
401: ANPSDVVDSI CGRAFDALKQ EDVVANEKED RQGPREAAVK EQQRAAEVST PELTCVPERG LNLEQSLSVC PHDSSVKSAI SSMNENGHKI LEMVQQPVAE
501: EEDLAETKTK TYKRARVESS SVHKADGEME KEAAEGEPSC RSHKSSAEPG DLQPKNLPEP CSVTQQLAKV KQSILDTVAS VRQFRCELER KEQSIADTLS
601: IVRQFRSEIE EKEDMLEASL LEIDVLGEKI SGINKILN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)