AT2G24650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA binding;DNA binding;sequence-specific DNA binding transcription factors | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA binding;DNA binding;sequence-specific DNA binding transcription factors; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT2G24680.1); Has 1264 Blast hits to 283 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1262; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:10483490..10487571 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 117811.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.01 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1045 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MANSRIYPQF FHTLVPSFHT HLMIPEDFFS EYIEGRSVAE LKLDFSDKSW EVKLSDRRIT DGWEEFVVAN DFRIGDVVAF RYVGNLVFHV SNLGPNYYEI 0101: EHNDGESLLR KRLHQVDFSS NNGDVCDSEE LPKEKKAKTN SEEADAVSSS SSADKSCFMA IITALDLTTD TLYLPLHFTS ANGLTRKNRE IILTDGGERS 0201: RVLDLRFDES SGTFYISRGW RNFCDENGQK AGGFFLFKLV GKGETLVLSF CPTESINGEE NITREDSKDE CSSLDSLMNI VEKKKYIPKP RGSPYSSYSP 0301: SHKQFVTFTL PPDYARIGKL SLSAPFVREN GINKPGEICL LDKHGRKWLT SLLLDSKGTM SLGKGWKEFV KANSLETGFT LKLIWEETTP VLSLCSPESN 0401: SDREQEEISK AIEKHSLFID PSNRDKISNN DKEENMSWER KKDHLKSRDS TLSSQKQFVT ITITPSSDRL VSLSNDSCLV VVSLLYFDMR LPKVFTRENG 0501: INKPGRITLL GKDGIKQQTN LLFDKANGAM SLGHGWKDFV KDNGLKTGDS FTLKLIWEDQ TPVLSLCPAD CSIDREAGGG RSETNQKKSL PIEPSTCKKI 0601: RKDVNIKDDN SKEKNDKEES KSVDGERKYL RGTYLTPSSQ KHFVTLTITP SSIKKDRLIL SPQFARKNNI DKPGMIYLLD TDGTKWLISL QRDKKGTMSL 0701: GKGWKEFAEA NDFKLGESFT MELVWEDTTP MLSLLRTEFR SSKANEKESI SSEHKTRESS PTIKNRIVTP ALTPEDVKAC KLILPSQFMK KIRTVDKERN 0801: HLKGRDLNPS CQKQFVTFTI TPTCVGKNRL ILSAQFAREN NINQPGTIYL LDTDGRKWLT TVKRDKKGTM SLGKGWKEFA DTKDLKSGDS FTMELIWEDT 0901: NPVLSLLRTK FSSSKSNKEE SIFLEPKSRD SSSPTIVNRF VTLALTPEDV TACKLILPSQ FMKANGINNK LGKITLLGEN GVEWPGYMLS LDGTLALGNG 1001: WEGFCEANGV KLGQTFTLEF VNEQDTTTTP VLKFSSVETI YKNVN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)