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AT2G24690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcriptional factor B3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding;DNA binding;sequence-specific DNA binding transcription factors (TAIR:AT2G24650.1); Has 627 Blast hits to 195 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 615; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW9PeggNOG:ENOG411054UEMBL:AC006954EMBL:CP002685
EnsemblPlants:AT2G24690EnsemblPlants:AT2G24690.1entrez:817005Gene3D:2.40.330.10
GeneID:817005GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT2G24690.1hmmpanther:PTHR31674hmmpanther:PTHR31674:SF5
InParanoid:Q8S8E8InterPro:IPR003340InterPro:IPR015300KEGG:ath:AT2G24690
OMA:PLQFMTEPaxDb:Q8S8E8Pfam:PF02362Pfam:Q8S8E8
Pfscan:PS50863PIR:G84639PRO:PR:Q8S8E8PROSITE:PS50863
ProteinModelPortal:Q8S8E8Proteomes:UP000006548RefSeq:NP_180045.5SMART:SM01019
SUPFAM:SSF101936TAIR:AT2G24690UniGene:At.39119UniProt:Q8S8E8
Coordinates (TAIR10) chr2:-:10499551..10503110
Molecular Weight (calculated) 87161.00 Da
IEP (calculated) 7.71
GRAVY (calculated) -0.68
Length 777 amino acids
Sequence (TAIR10)
(BLAST)
001: MANSLILGSP INPEGEMMIQ FSNNHDNNIE FQRRKKMKKN NPETETDSSS DLSCFVAQTG ALLHLPQGFT SSNGSNRECR KSPRPIISSY SSSEKQFVTF
101: TLAPVDGRHC RLRLPMQFTR ENGINKPGKI YLVGKDGSKW LANLLLENNR GRMTLGDGWK SFVKANGLKT GDTYTFKLLW EDTTPVLSLC FEEYNTDTRV
201: GEESSKESLP AEPSSQEKIV KDDNNKDESS TWKREGNHLR CKDSTSPSQN CTLTVTITPD SLEHGRLRLP LQFMTENSMN KPGEITLLGT DGAKWMASLL
301: LEKKGRMSLG KGWKDFAKAN GLKTGDSITL EPIWEDRTPV LSIKSSSGKG QSEFSKESLS IKPSSGNMTK KVENNREASR KYPPRSRESS SAIQNQFMAL
401: TPLRDIVSQV AHDLSIGEVI NFRHKGDNML RVSDLGSNCC GVQDLLAPSS NYDHDNISNI SMKINPHIRK EAVTFSSYDG YAHDNFEPPS KKKVKKNNPE
501: MEADYLSDHS CFVSHVTTSS LHTNALSLEV KESLPIEPSI KPNISEDDNN KEEDIIEENS SFEREKNHWI CIDSISSSQN RFLTLTITPD SLKHGRLRLP
601: LQFMIENSMN KPGEITVLGK DGAKWLVSLL LERRGRMSLD ASSGQETREA EKNREESSSL WELEKRTYCP RKRDSSSDVK NRFLTLTLAP EDVKDGNLHL
701: PCQFMRINGI NKPGQITLLG RGGMKWFAYL LSGDGTVVVG NGWKGFCEAN GVMLGETFVL EFIPKDDTNH VFKFYTK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)