AT5G25980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glucoside glucohydrolase 2 | ||||||||||||||||
| Curator Summary (TAIR10) |
Myrosinase (thioglucoside glucohydrolase) gene involved in glucosinoloate metabolism. | ||||||||||||||||
| Computational Description (TAIR10) |
glucoside glucohydrolase 2 (TGG2); FUNCTIONS IN: thioglucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: glucosinolate catabolic process; LOCATED IN: cytosolic ribosome, apoplast, peroxisome, chloroplast, vacuole; EXPRESSED IN: phloem, vascular bundle, fruit, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: thioglucoside glucohydrolase 1 (TAIR:AT5G26000.1); Has 10736 Blast hits to 10485 proteins in 1462 species: Archae - 125; Bacteria - 7652; Metazoa - 685; Fungi - 198; Plants - 1368; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:9072730..9075143 | ||||||||||||||||
| Molecular Weight (calculated) | 53425.40 Da | ||||||||||||||||
| IEP (calculated) | 6.89 | ||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||
| Length | 467 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD 101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL 201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES 301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS 401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)