AT1G54040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.863 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : epithiospecifier protein | ||||||||||||||||
| Curator Summary (TAIR10) |
Epithiospecifier protein, interacts with WRKY53. Involved in pathogen resistance and leaf senescence. | ||||||||||||||||
| Computational Description (TAIR10) |
epithiospecifier protein (ESP); FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: response to jasmonic acid stimulus, glucosinolate catabolic process, leaf senescence, defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: nitrile specifier protein 1 (TAIR:AT3G16400.2); Has 5483 Blast hits to 3741 proteins in 298 species: Archae - 4; Bacteria - 264; Metazoa - 3381; Fungi - 416; Plants - 905; Viruses - 2; Other Eukaryotes - 511 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20170995..20171780 | ||||||||||||||||
| Molecular Weight (calculated) | 28527.20 Da | ||||||||||||||||
| IEP (calculated) | 4.87 | ||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||
| Length | 261 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVAVGTKIYI FGGRDENRNF ENFRSYDTVT SEWTFLTKLD EVGGPEARTF HSMASDENHV YVFGGVSKGG TMNTPTRFRT IEAYNIADGK WAQLPDPGDN 101: FEKRGGAGFA VVQGKIWVVY GFATSIVPGG KDDYESNAVQ FYDPASKKWT EVETTGAKPS ARSVFAHAVV GKYIIIFAGE VWPDLNGHYG PGTLSNEGYA 201: LDTETLVWEK LGEEGAPAIP RGWTAYTAAT VDGKNGLLMH GGKLPTNERT DDLYFYAVNS A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)