AT5G25040.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.774 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Major facilitator superfamily protein; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G25050.1); Has 755 Blast hits to 740 proteins in 152 species: Archae - 2; Bacteria - 152; Metazoa - 0; Fungi - 11; Plants - 247; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:8622185..8623965 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 51291.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.35 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.46 | ||||||||||||||||||||||||
| Length | 457 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAREEQNIEN RGSVHVVERE SNLRSVVCGP VRWLKMLASK LHWSYVFAVV SNCGINQGFG YSLGHVATDY YMKDVQKVQP SQYQALSAIT RISWIIFKPL 101: FGILTDVLPI FGFHRRPYFI LAGVIGVVSL LFISLQSNLH LYLALFWMTI SSAAMAIADV TIDACTTYNS NKHPSLASDM QSLCSLSYSI GELLGFFMSG 201: ILVHLVGSKG VFGLLTFTFA LVSVVGVLFS EPRVHGFSFK QNFTNAMKAM WRTIKCSDVW QPSLYMFITR ALGLDIKEGL FYWFTDSKDG PLFAQETVGF 301: ILSIGSIGSI LGVLLYNLRL KDHPFRKLFL WTQLLFALSG MFDLILVLRL NLKFGLPDYL FIVVDGIVSK MIIRLTWMVI FVLNTKLCPH GIEGTFFALL 401: MSIDNAGLMT SSWLGGKMLH VLKNTFKLPA EIMGEDSEEE GTRNLELASL VDYVDRS |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)