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AT5G18830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : squamosa promoter binding protein-like 7
Curator
Summary (TAIR10)
Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter of the copper responsive miRNAs miR398b and miR389c.
Computational
Description (TAIR10)
squamosa promoter binding protein-like 7 (SPL7); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: copper ion homeostasis, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 1 (TAIR:AT2G47070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17277eggNOG:ENOG410IF57eggNOG:ENOG4111YFEEMBL:AC068655
EMBL:AF367355EMBL:AJ011611EMBL:AJ011612EMBL:AJ011613
EMBL:AY063815EMBL:AY078050EMBL:CP002688EnsemblPlants:AT5G18830
EnsemblPlants:AT5G18830.1entrez:832001EvolutionaryTrace:Q8S9G8ExpressionAtlas:Q8S9G8
Gene3D:4.10.1100.10GeneID:832001Genevisible:Q8S9G8GO:GO:0003677
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0046872
hmmpanther:PTHR31251hmmpanther:PTHR31251:SF2HOGENOM:HOG000084016InParanoid:Q8S9G8
InterPro:IPR004333PaxDb:Q8S9G8PDB:1UL5PDBsum:1UL5
Pfam:PF03110Pfam:Q8S9G8Pfscan:PS51141PhylomeDB:Q8S9G8
PIR:T52605PIR:T52606PRIDE:Q8S9G8PRO:PR:Q8S9G8
PROSITE:PS51141ProteinModelPortal:Q8S9G8Proteomes:UP000006548RefSeq:NP_197384.1
RefSeq:NP_850850.1SMR:Q8S9G8STRING:3702.AT5G18830.3SUPFAM:SSF103612
TAIR:AT5G18830tair10-symbols:ATSPL7tair10-symbols:SPL7TMHMM:TMhelix
UniGene:At.495UniProt:Q8S9G8
Coordinates (TAIR10) chr5:+:6276116..6280227
Molecular Weight (calculated) 89622.20 Da
IEP (calculated) 6.78
GRAVY (calculated) -0.38
Length 801 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSLSQSPPP PEMDIQPPAL VNDDPSTYSS ALWDWGDLLD FAADERLLVD QIHFPPVLSP PLPPLIPTQT PAESELDPSP EESGSGSDRV RKRDPRLICS
101: NFIEGMLPCS CPELDQKLED AELPKKKRVR GGSGVARCQV PDCEADISEL KGYHKRHRVC LRCATASFVV LDGENKRYCQ QCGKFHLLPD FDEGKRSCRR
201: KLERHNNRRK RKPVDKGGVA AEQQQVLSQN DNSVIDVEDG KDITCSSDQR AEEEPSLIFE DRHITTQGSV PFTRSINADN FVSVTGSGEA QPDEGMNDTK
301: FERSPSNGDN KSAYSTVCPT GRISFKLYDW NPAEFPRRLR HQIFQWLANM PVELEGYIRP GCTILTVFIA MPEIMWAKLS KDPVAYLDEF ILKPGKMLFG
401: RGSMTVYLNN MIFRLIKGGT TLKRVDVKLE SPKLQFVYPT CFEAGKPIEL VVCGQNLLQP KCRFLVSFSG KYLPHNYSVV PAPDQDGKRS CNNKFYKINI
501: VNSDPSLFGP AFVEVENESG LSNFIPLIIG DAAVCSEMKL IEQKFNATLF PEGQEVTACS SLTCCCRDFG ERQSTFSGLL LDIAWSVKVP SAERTEQPVN
601: RCQIKRYNRV LNYLIQNNSA SILGNVLHNL ETLVKKMEPD SLVHCTCDCD VRLLHENMDL ASDIHRKHQS PIESKVNPPS SGCCCVSSQK DIPSRILNFN
701: KDPEAGLDCK ERIQADCSPD SGGKETDPLL NKEVVMNVND IGDWPRKSCI KTHSALAFRS RQTMFLIATF AVCFAVCAVL YHPNKVTQLA VAIRMRLVHK
801: I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)