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AT2G28320.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.955
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pleckstrin homology (PH) and lipid-binding START domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pleckstrin homology (PH) and lipid-binding START domains-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Pleckstrin homology-type (InterPro:IPR011993), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) and lipid-binding START domains-containing protein (TAIR:AT3G54800.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFRHeggNOG:ENOG410YQJJEMBL:CP002685EnsemblPlants:AT2G28320
EnsemblPlants:AT2G28320.1entrez:817379Gene3D:2.30.29.30Gene3D:3.30.530.20
GeneID:817379GO:GO:0005886GO:GO:0008289Gramene:AT2G28320.1
hmmpanther:PTHR12136hmmpanther:PTHR12136:SF41InParanoid:F4IHT0InterPro:IPR001849
InterPro:IPR002913InterPro:IPR009769InterPro:IPR011993InterPro:IPR023393
iPTMnet:F4IHT0KEGG:ath:AT2G28320OMA:GMKRRDFPaxDb:F4IHT0
Pfam:PF00169Pfam:PF01852Pfam:PF07059Pfscan:PS50003
Pfscan:PS50848PRIDE:F4IHT0PROSITE:PS50003PROSITE:PS50848
ProteinModelPortal:F4IHT0Proteomes:UP000006548RefSeq:NP_180399.2SMART:SM00233
SMART:SM00234SUPFAM:SSF50729SUPFAM:SSF55961TAIR:AT2G28320
UniGene:At.46281UniProt:F4IHT0
Coordinates (TAIR10) chr2:+:12095161..12099424
Molecular Weight (calculated) 83252.60 Da
IEP (calculated) 7.82
GRAVY (calculated) -0.43
Length 737 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFGSENESE TKMEGWLYII RSNRFGLHFS RKRYFVLGDH LLKSFKSISD SKTKNAGRSA VIDSCIRVTD NGRENVHRKA FFIFTLYNTS NHNDQLKLGA
101: SSPEDAARWI NLIKEAALKG APFPGDVFNC SRSRWDSLRL SSSVRDHHSN SIDWTLRSSA RVDPVTTDVV APSPWTIFGC QNGLRLFKEA KERDSLGRWD
201: DHPAIMAVGV VDGTSETIFQ TLLSLGPSRS EWDFCFYQGS VVEHLDGHTD IIHKQLYSDW LPWGMKRRDF SLRRYWRRED DGTYVILYHS VFHKKCPPQK
301: GYVRACLKSG GYVISPIDNG KQSVVKHMLA VDWKSWRSYV KPSLARSITV KMLGRISALR ELFRAKHGSF PPNLSSGELS RSARLTQNED GVFGDSSLRE
401: NEMFKDTANE ERDKFPSERS SLVDLDEFFD VPEPSDNDNL DDSWTSDFDL DTCCQESRQP KLNSATSLVK KLHDLAVQKR GYVDLHERAK EESSPHATCN
501: PPCCYGTTLP TDPSCDLPCS WTTTDPSTFL IRGKTYLDDQ KKVKAKGTLM EMVAADWLKS DKREDDLGSR PGGIVQKYAA KGGPEFFFIV NIQVPGSTTY
601: SLVLYYMMST PIEEHPLLVS FVNGDDAYRN SRFKLIPYIS KGSWIVKQSV GKKACLIGQA LEINYFRGKN YIELGVDIGS STVARGVVSL VLGYLNKLVI
701: EMAFLIQANT EEELPEYLLG TCRFNHLDAS KAISIIP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)