AT2G26800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Aldolase superfamily protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Aldolase superfamily protein; FUNCTIONS IN: hydroxymethylglutaryl-CoA lyase activity, catalytic activity; INVOLVED IN: leucine metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Pyruvate carboxyltransferase (InterPro:IPR000891); BEST Arabidopsis thaliana protein match is: 2-isopropylmalate synthase 2 (TAIR:AT5G23020.1); Has 10820 Blast hits to 10806 proteins in 2215 species: Archae - 426; Bacteria - 7058; Metazoa - 235; Fungi - 307; Plants - 196; Viruses - 0; Other Eukaryotes - 2598 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11429192..11432185 | ||||||||||||
| Molecular Weight (calculated) | 46387.70 Da | ||||||||||||
| IEP (calculated) | 8.01 | ||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||
| Length | 433 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSLEEPLSF DKLPSMSTMD RIQRFSSGAC RPRDDVGMGH RWIEGRDCTT SNSCIDDDKS FAKESFPWRR HTRKLSEGEH MFRNISFAGR TSTVSGTLRE 101: SKSFKEQKYS TFSNENGTSH ISNKISKGIP KFVKIVEVGP RDGLQNEKNI VPTSVKVELI QRLVSSGLPV VEATSFVSPK WVPQLADAKD VMDAVNTLDG 201: ARLPVLTPNL KGFQAAVSAG AKEVAIFASA SESFSLSNIN CTIEESLLRY RVVATAAKEH SVPVRGYVSC VVGCPVEGPV LPSKVAYVVK ELYDMGCFEI 301: SLGDTIGIGT PGSVVPMLEA VMAVVPADKL AVHFHDTYGQ ALANILVSLQ MGISIVDSSI AGLGGCPYAK GASGNVATED VVYMLNGLGV HTNVDLGKLI 401: AAGDFISKHL GRPNGSKAAV ALNRRITADA SKI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)